Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00007404-protein ID=TCONS_00007404-protein|Name=TCONS_00007404-protein|organism=Clytia hemisphaerica|type=polypeptide|length=3392bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term Definition
GO:0005515 protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0005515 protein binding
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
500 1000 1500 2000 2500 3000 Score = Score = Score = Score = Expect = 4.2E-7 / Score = 29.1 Expect = 0.0022 / Score = 17.5 Score = Score = Score = Score = Score = Score = Score = Score = Score = Expect = 7.8E-5 / Score = 24.5 Expect = 1.2E-28 / Score = 99.2 Expect = 8.8E-16 / Score = 58.4 Score = 30.386 Score = Expect = 5.2E-49 / Score = 167.1 Expect = 3.3E-85 / Score = 286.2 Expect = 0.18 / Score = 11.7 Expect = 8.9E-5 / Score = 22.3 Expect = 0.043 / Score = 13.6 Score = 9.246 Score = 8.176 Score = Score = Sequence Coil Coil Coil Coil G3DSA:1.10.287.70 G3DSA:3.50.4.10 mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite SSF81324 SM00308 G3DSA:2.60.60.20 PF01477 PS50095 SSF49723 PF02010 PF08016 G3DSA:2.60.40.10 G3DSA:2.60.40.10 PS50221 PS50948 SSF49299 SSF49299
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 1356..1376 None No IPR available COILS Coil Coil coord: 2322..2342 None No IPR available COILS Coil Coil coord: 1706..1726 None No IPR available COILS Coil Coil coord: 3258..3278 None No IPR available GENE3D 1.10.287.70 coord: 2659..2938 None No IPR available GENE3D 3.50.4.10 coord: 1..55 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 3351..3392 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 2131..2247 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 3012..3060 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 3075..3137 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 3260..3279 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 3175..3196 None No IPR available SUPERFAMILY 81324 Voltage-gated potassium channels coord: 2710..2772 IPR001024 PLAT/LH2 domain SMART SM00308 LH2_4 coord: 1897..2010 IPR001024 PLAT/LH2 domain GENE3D 2.60.60.20 coord: 1896..2022 IPR001024 PLAT/LH2 domain PFAM PF01477 PLAT coord: 1899..2004 IPR001024 PLAT/LH2 domain PROSITE PS50095 PLAT coord: 1897..2012 IPR001024 PLAT/LH2 domain SUPERFAMILY 49723 Lipase/lipooxygenase domain (PLAT/LH2 domain) coord: 1896..2003 IPR002859 PKD/REJ-like domain PFAM PF02010 REJ coord: 889..1274 IPR013122 Polycystin cation channel, PKD1/PKD2 PFAM PF08016 PKD_channel coord: 2485..2936 IPR013783 Immunoglobulin-like fold GENE3D 2.60.40.10 coord: 599..684 IPR013783 Immunoglobulin-like fold GENE3D 2.60.40.10 coord: 692..788 IPR000203 GPS motif PROSITE PS50221 GPS coord: 1790..1840 IPR003609 PAN/Apple domain PROSITE PS50948 PAN coord: 1..56 IPR000601 PKD domain SUPERFAMILY 49299 PKD domain coord: 605..685 IPR000601 PKD domain SUPERFAMILY 49299 PKD domain coord: 655..786
Blast
BLAST of TCONS_00007404-protein vs. Swiss-Prot (Human)
Match:
PK2L1 (Polycystic kidney disease 2-like 1 protein OS=Homo sapiens GN=PKD2L1 PE=1 SV=1)
HSP 1 Score: 206.838 bits (525), Expect = 1.947e-54
Identity = 179/709 (25.25%), Postives = 311/709 (43.86%), Query Frame = 0
Query: 2380 KELKMKSILRELVLYLVYALIVSMIGYFARDTSAFQLTRNIDYMLTLKEAPERPKKEVVYTYKCNETIIVEKKKYFGNCSGLNETEISNKTFTVTNMEDFESRTIFPKVTRDKDIWDYLEQVLLPQLYPQRWYTSLDPRHQGDYDVWNFPSKLYTNDLNTKLLTGARIRQLRSKKMDCPITKVFPKKASSFQCHNEYRFFDQEDRDFLFTWDQPYDYPTNTKHIPHHKPWRYHKWDELDTYPIPAEYNTYSGGGYIIELFPKNQTRNEDNKAFLDQLKEKRWIDQYTRAVIVEMALFHPATTYFDSVNIVFEKPATGGVVLYQTVITFKLYRYTSSYTFFVILSEVLFLLYTILFCIREARIIYKLRWKYFKAFWNLIEFSNLILSLVTVILYLYRDYYTRQTLKEIPGKVPQKYVNLYFASQLDFLLTYIVALICFCVTVKFIKLLRFNKRISMLSSTLRRAGFPLLMFAITFGLVIIAFTLLAHLTFGNYLDGYKTISNSFSSIISLLLGKFSYHQFDEVNEYLGPAFFFGFNIFVNLIVMNMYISILNDSITEVRFEVAQQKNEYEMIDYTWDKFK--GLLGFKGSNRSEEIENALEGDSSARRVEPPERRLIPDDLAMDSARSTKNLLHEGHEVAETSFMSNK---------DEKENLN-----EEEDVFVNER-----SSLVGSGSQTSIPRRKRSSVKISTTE 3067
+EL +K+ LREL++Y+V+ + + ++ Y +SA Y Y T++ ++ F T + S F ++ D WD+ + LL LY +WY + H S +Y ++ LL R+RQL+ + C + + F + S C++ Y +E F P++ W YH DEL + +YSGGGY ++L Q E +A L+E W+D+ TR V ++ ++++ F + +V E PATGG + + T KL RY S++ FF++ EV+F ++ + + E ++ R +Y + WN+++ ++LS+V V +++R + + ++ + P Y + F + + A+ F +K K + FNK ++ LSSTL R +L FA+ F +V A+ L +L FG ++ + T + ++LG F Y+ D N LGPA+F + FV +++NM+++I+ND+ +EV+ E+A QK+E ++ D + L R +++ L+G + E D + + L H HE+ E + K DEKE EEE V +N S+V S S P R+ +S E
Sbjct: 93 RELYIKTTLRELLVYIVFLVDICLLTYGMTSSSA-------------------------YYY----------------------TKVMSELFLHTPSDTGVS---FQAISSMADFWDFAQGPLLDSLYWTKWYNNQSLGHGSH-------SFIYYENM---LLGVPRLRQLKVRNDSCVVHEDFREDILS--CYDVYSPDKEEQLPF-----GPFN----------GTAWTYHSQDELGGFSHWGRLTSYSGGGYYLDLPGSRQGSAEALRA----LQEGLWLDRGTRVVFIDFSVYNANINLFCVLRLVVEFPATGGAIPSWQIRTVKLIRYVSNWDFFIVGCEVIFCVFIFYYVVEEILELHIHRLRYLSSIWNILDLVVILLSIVAVGFHIFRTLEVNRLMGKLLQQ-PNTYADFEFLAFWQTQYNNMNAVNLFFAWIKIFKYISFNKTMTQLSSTLARCAKDILGFAVMFFIVFFAYAQLGYLLFGTQVENFSTFIKCIFTQFRIILGDFDYNAIDNANRILGPAYFVTYVFFVFFVLLNMFLAIINDTYSEVKEELAGQKDELQLSDLLKQGYNKTLLRLRLRKERVSDVQKVLQGGEQEIQFE-------------DFTNTLRELGHAEHEITELTATFTKFDRDGNRILDEKEQEKMRQDLEEERVALNTEIEKLGRSIVSSPQGKSGPEAARAGGWVSGEE 706
The following BLAST results are available for this feature:
