TCONS_00007309-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007309-protein
Unique NameTCONS_00007309-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length735

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007309-protein ID=TCONS_00007309-protein|Name=TCONS_00007309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=735bp
MTASPVIVSQRAKERDYLLALNDRFQNYVSRVRTMREQGKQIENNTFIAH
TQALENELFEVKSIYEKELETCRGQLDSMTSERNAYQLEASKKGALATEY
QDKYNNELTTRKKLENALADAHRLLSEKDSLIQELRITIAQHQNAHLDTT
KERDALQSTLNAVQTLCDSESKARADLEASVQKLSDQLTFERQLHDKALM
ELNNKLSAAERAISIADEKLREHDIVDDNLAQTIAKMRMQTQAEFRRFQD
ESEAAYQASLSQIKGQLDAESKTLAQSNEENIHLKAIIEEMNAKIGKLDS
RCNSVEEQNRSLIHTLECERQQAQNTIKELEHKLREMQEHLNAKIRELNV
AYNAQIPLDLEIEAFANLLDAEEKRLSVALANPPSELVQTARGDLVSSRG
HYTGVRSMPGSPRKPVSGINNSPTNFSARPKSVPINEDTKELPRSDSPGK
PGSPGAYYLPGIGDNSSSTHHVRIFHVDPAGKFIRIFNNSNYQDENIGGY
IIQQNMNGRPVGMFRFPPKTILKASSYTTVWSASSLAKHNPPSDFLWRAQ
PVWRTGINTTTILSKPNGMAISWTTPVKPYGINPPIKTRPNYMTIDDVIL
ENLSHMNISPSSPQNTHLPAAQELLNRTITDIKPTDQMTPKDVLRPPSAK
PRVRTTTSALLERDEDTMQTQEKKRPSTVHVTNIHEHLRRAHQISKDTTQ
ATQRRPILINKVPHQTSILRTTKSAPLRRRFISTY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004102XLOC_004102Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007309TCONS_00007309Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001664IF
IPR001322Lamin_tail_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005882intermediate filament
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005882 intermediate filament
molecular_function GO:0005198 structural molecule activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 97..134
NoneNo IPR availableCOILSCoilCoilcoord: 313..347
NoneNo IPR availableCOILSCoilCoilcoord: 260..308
NoneNo IPR availableCOILSCoilCoilcoord: 192..219
NoneNo IPR availableCOILSCoilCoilcoord: 167..187
NoneNo IPR availableGENE3D1.20.5.730coord: 254..332
e-value: 7.7E-4
score: 19.0
NoneNo IPR availableGENE3D1.20.5.170coord: 333..377
e-value: 2.1E-6
score: 27.3
NoneNo IPR availableGENE3D1.20.120.330coord: 9..189
e-value: 0.049
score: 12.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 392..462
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 634..659
NoneNo IPR availableSUPERFAMILY64593Intermediate filament protein, coiled coil regioncoord: 296..370
IPR001664Intermediate filament proteinSMARTSM01391Filament_2coord: 13..375
e-value: 0.0021
score: -10.3
IPR001664Intermediate filament proteinPFAMPF00038Filamentcoord: 14..375
e-value: 2.7E-37
score: 128.9
IPR001322Lamin Tail DomainPFAMPF00932LTDcoord: 466..574
e-value: 1.3E-11
score: 44.8
IPR001322Lamin Tail DomainGENE3D2.60.40.1260coord: 422..579
e-value: 6.5E-26
score: 90.7
IPR001322Lamin Tail DomainSUPERFAMILY74853Lamin A/C globular tail domaincoord: 465..580

Blast
[Close]
BLAST of TCONS_00007309-protein vs. Swiss-Prot (Human)
Match: LMNA (Prelamin-A/C OS=Homo sapiens GN=LMNA PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 4.017e-43
Identity = 150/587 (25.55%), Postives = 268/587 (45.66%), Query Frame = 0 
Query:    4 SPVIVSQRAKERDYLLALNDRFQNYVSRVRTMREQGKQIENNTFIAHTQALENELFEVKSIYEKELETCRGQLDSMTSERNAYQLEASKKGALATEYQDKYNNELTTRK-KLENALADAHRLLSEKDSLI--QELRITIAQHQNAHL-----DTTKERDALQSTLNAVQTLCDSESKARADLEASVQKLSDQLTFERQLHDKALMELNNKLSAAERAISIADEKLREHDIVDDNLAQTIAKMRMQTQAEFRRFQDESEAAYQASLSQIKGQLDAESKTLAQSNEENIHLKAIIEEMNAKIGKLDSRCNSVEEQNRSLIHTLECERQQAQNTIKELEHKLREMQEHLNAKIRELNVAYNAQIPLDLEIEAFANLLDAEEKRLSVALANPPSELVQTARGDLVSSRGHYTGVRSMPGSPRKPVSGINNSPTNFSARPKSVPINEDTKELPRSDSPGKPGSPGAYYLPGIGDNSSSTHHVRIFHVDPAGKFIRIFNNSNYQDENIGGYIIQQNMNGRPVGMFRFPPKTILKASSYTTVWSASSLAKHNPPSDFLWRAQPVWRTGINTTTILSKPNGMAISWTTPVKPYGI 582
            SP  ++ R +E++ L  LNDR   Y+ RVR++  +   +         + +  E+  +K+ YE EL   R  LDS+  ER   QLE SK   +  E++     EL  R  K E  L  A   L + ++L+  +E  ++ A  +   L     D   +   L++ L   +     E   R D E  +Q + ++L F++ ++ + L E   +     R + I + K RE    +  LA  + ++R Q + +  +++ E E  Y A L   +   +  S  +  ++EE    +  I+ ++A++ +L  +  + E + R L  +L  ER  ++  + E E ++ EM+  +  ++ E     + ++ LD+EI A+  LL+ EE+RL ++    PS   Q +RG   S      G  S+    RK  S    S ++FS                                     ++ ++  V +  VD  GKF+R+ N SN +D+++G + I++     P+  +RFPPK  LKA    T+W+A + A H+PP+D +W+AQ  W  G +  T L    G  ++    V+   +
Sbjct:   22 SPTRIT-RLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLR-ITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSK---VREEFK-----ELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRVDAENRLQTMKEELDFQKNIYSEELRETKRRHET--RLVEIDNGKQRE---FESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRLS----PSPTSQRSRGRASSHSSQTQGGGSVT-KKRKLES--TESRSSFS------------------------------------QHARTSGRVAVEEVDEEGKFVRLRNKSN-EDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLVRSVTV 549
The following BLAST results are available for this feature:
BLAST of TCONS_00007309-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LMNA4.017e-4325.55Prelamin-A/C OS=Homo sapiens GN=LMNA PE=1 SV=1[more]
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