TCONS_00007074-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007074-protein
Unique NameTCONS_00007074-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length478

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007074-protein ID=TCONS_00007074-protein|Name=TCONS_00007074-protein|organism=Clytia hemisphaerica|type=polypeptide|length=478bp
MFKFIPLSFFLVLLHQTQGQGDFNECQLQEESCSDCISFRPECAWCEDVI
YTTEGKDGKPIYLAKCDTRENHNTQKCNNVTYPESEFIPTKNEELKNKTR
VSPQEIKIKLRPGQPVEIPIKVQIPINFPIDLYYLMDLSKSMLDDLAQIQ
ELGKILGKELEQITEQFRLGFGGFVDKPVGPYTKTLPAEIEGILEKIEVD
KKEYTYAYRNHLPLNEDINAFRSTIAGLNISFNVDSPECSLEALTQVITC
QSSIGWRNKNEARRIVIITTDALFHYSGDGLLGGFPKPNDGQCHMVNNVY
NAWDRYDYPSLSQVKELMLDNDMVPIFATTGNEALYKKVASFIGNGAQAE
PLAEDSSNIGTLIRTAYERIARTVTIDADVPPNIKTGFSAICGREKNRTQ
GATCNNIEIGETVTFFANLEAESCDADQTVEFNIKTSFDNVKVKLELICE
CDCGPTTVDSSDCTDRGNLTCGKCFCDR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003958XLOC_003958Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007074TCONS_00007074Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015812Integrin_bsu
IPR002369Integrin_bsu_VWA
IPR033760Integrin_beta_N
IPR002035VWF_A
IPR032695Integrin_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015812Integrin beta subunitPRINTSPR01186INTEGRINBcoord: 235..257
score: 48.47
coord: 168..187
score: 60.93
coord: 202..221
score: 25.74
coord: 30..46
score: 49.67
coord: 307..330
score: 40.74
coord: 343..367
score: 38.37
coord: 128..146
score: 80.7
coord: 100..113
score: 48.15
IPR002369Integrin beta subunit, VWA domainSMARTSM00187INB_2coord: 32..451
e-value: 9.8E-124
score: 427.0
IPR002369Integrin beta subunit, VWA domainPFAMPF00362Integrin_betacoord: 127..373
e-value: 4.5E-79
score: 265.6
NoneNo IPR availableGENE3D2.60.40.1510coord: 318..475
e-value: 7.6E-31
score: 106.9
NoneNo IPR availableGENE3D2.60.40.1510coord: 89..234
e-value: 1.2E-21
score: 77.0
NoneNo IPR availableSUPERFAMILY103575Plexin repeatcoord: 28..79
IPR033760Integrin beta N-terminalPFAMPF17205PSI_integrincoord: 24..78
e-value: 9.8E-8
score: 31.6
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 127..370
IPR032695Integrin domainSUPERFAMILY69179Integrin domainscoord: 379..455

Blast
[Close]
BLAST of TCONS_00007074-protein vs. Swiss-Prot (Human)
Match: ITB7 (Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.742e-84
Identity = 153/465 (32.90%), Postives = 259/465 (55.70%), Query Frame = 0 
Query:   32 SCSDCISFRPECAWCEDVIYTTEGKDGKPIYLAKCDTRENHNTQKC--NNVTYPESEFIPTKNEEL------KNKTRVSPQEIKIKLRPGQPVEIPIKVQIPINFPIDLYYLMDLSKSMLDDLAQIQELGKILGKELEQITEQFRLGFGGFVDKPVGPYTKTLPAEIEGILEKIEVDKKEYTYAYRNHLPLNEDINAFRSTIAGLNISFNVDSPECSLEALTQVITCQSSIGWRNKNEARRIVIITTDALFHYSGDGLLGGFPKPNDGQCHM-VNNVYNAWDRYDYPSLSQVKELMLDNDMVPIFA-TTGNEALYKKVASFIGNGAQAEPLAEDSSNIGTLIRTAYERIARTVTID-ADVPPNIKTGFSAIC-------GREKNRTQGATCNNIEIGETVTFFANLEAESCDAD-QTVEFNIKTSFDNVKVKLELICECDCGPTTVDSSDCTD-RGNLTCGKCFC 476
            SC  CI   P CAWC+ + +T  G+        +C  RE    + C    +  P  +    +++ L      +  T+++PQ +++ LRPG+P ++ ++      +P+DLYYLMDLS SM DDL ++++LG  L   L+++T   R+GFG FVDK V P+  T+P+++        +++ +  +++ + L L  D  AF   +   ++S N+DSPE   +A+ Q   CQ  IGWRN +   R+++ T+D  FH +GDG LGG   P+DG CH+  N +Y+    +DYPS+ QV + +   ++ PIFA T+    +Y++++  I   A  E L+EDSSN+  LI  AY  ++ TVT++ + +PP +   + + C       G+ ++R Q   CN++ I +TVTF+ +L+A  C  +   +        + + V+L  +C+C+C  T   +  C+D +G+L CG C C
Sbjct:   50 SCQKCILSHPSCAWCKQLNFTASGE----AEARRCARREELLARGCPLEELEEPRGQQEVLQDQPLSQGARGEGATQLAPQRVRVTLRPGEPQQLQVRFLRAEGYPVDLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPC-PTRLERCQSPFSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGWRNVS---RLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAANIQPIFAVTSAALPVYQELSKLIPKSAVGE-LSEDSSNVVQLIMDAYNSLSSTVTLEHSSLPPGVHISYESQCEGPEKREGKAEDRGQ---CNHVRINQTVTFWVSLQATHCLPEPHLLRLRALGFSEELIVELHTLCDCNCSDTQPQAPHCSDGQGHLQCGVCSC 502
The following BLAST results are available for this feature:
BLAST of TCONS_00007074-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITB71.742e-8432.90Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1 SV=1[more]
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