TCONS_00007062-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00007062-protein
Unique Name	TCONS_00007062-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	535

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00007062-protein ID=TCONS_00007062-protein|Name=TCONS_00007062-protein|organism=Clytia hemisphaerica|type=polypeptide|length=535bp
MALMYRSSSSLARLFKPSFTTRFATTSVNAVNEKIQKKKEAALLGGGEKR
IKSQHKKGKLTARERLGLLLDKGTFSEYDMYMEHDCSEFGMQDQKFTGDS
VVTGHGKINGRPVFVFSQDFTVFGGSLSMAHAKKICKIMDKAMMLGCPVI
GLNDSGGARIQEGVESLAGYAHIFQRNVNASGVIPQISLIMGPCAGGAVY
SPAITDFTFMVKDTSYLFITGPDVVKTVTHEDVTFEDLGGAKVHTQISGV
AAGAFDNDIHAISQLREFFNFLPLSNKDQSPEIPTSDPRDRLCPVLESII
PSDPLKGYDMKGVMKSVADNNELFEIMPKWAENIVIGFARMNGKTVGFVG
NQPLKQAGCLDIEASTKAARFVRFLDAFNIPIVTFVDVPGFLPGVNQEHG
GIIRHGAKLLYAYAEATVPKITFITRKAYGGAYDVMSSQHLRGDTNYAWP
SAEVAVMGAKGAVQIIFRGSDAEKMARDEEEYVEKFANPFPAAVKGYIDD
IISPNETRKKICDDLELLAKKELENPKKKHGNIPL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003949	XLOC_003949	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00007062	TCONS_00007062	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR034733	AcCoA_carboxyl
IPR011762	COA_CT_N
IPR011763	COA_CT_C
IPR029045	ClpP/crotonase-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0016874	ligase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016874	ligase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.226.10		coord: 281..529 e-value: 2.5E-63 score: 213.9
None	No IPR available	GENE3D	3.90.226.10		coord: 19..280 e-value: 1.5E-79 score: 266.4
IPR034733	Acetyl-CoA carboxylase	PFAM	PF01039	Carboxyl_trans	coord: 54..533 e-value: 3.7E-186 score: 619.5
IPR011762	Acetyl-coenzyme A carboxyltransferase, N-terminal	PROSITE	PS50980	COA_CT_NTER	coord: 28..284 score: 70.938
IPR011763	Acetyl-coenzyme A carboxyltransferase, C-terminal	PROSITE	PS50989	COA_CT_CTER	coord: 288..529 score: 51.866
IPR029045	ClpP/crotonase-like domain	SUPERFAMILY	52096	ClpP/crotonase	coord: 32..278
IPR029045	ClpP/crotonase-like domain	SUPERFAMILY	52096	ClpP/crotonase	coord: 254..535

Blast

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BLAST of TCONS_00007062-protein vs. Swiss-Prot (Human)
Match: PCCB (Propionyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens GN=PCCB PE=1 SV=3)

HSP 1 Score: 762.681 bits (1968), Expect = 0.000e+0
Identity = 366/541 (67.65%), Postives = 441/541 (81.52%), Query Frame = 0

Query:    1 MALMYRSSSSLARLFKPSFTTRFATTSV----NAVNEKIQKKKEAALLGGGEKRIKSQHKKGKLTARERLGLLLDKGTFSEYDMYMEHDCSEFGM--QDQKFTGDSVVTGHGKINGRPVFVFSQDFTVFGGSLSMAHAKKICKIMDKAMMLGCPVIGLNDSGGARIQEGVESLAGYAHIFQRNVNASGVIPQISLIMGPCAGGAVYSPAITDFTFMVKDTSYLFITGPDVVKTVTHEDVTFEDLGGAKVHTQISGVAAGAFDNDIHAISQLREFFNFLPLSNKDQSPEIPTSDPRDRLCPVLESIIPSDPLKGYDMKGVMKSVADNNELFEIMPKWAENIVIGFARMNGKTVGFVGNQPLKQAGCLDIEASTKAARFVRFLDAFNIPIVTFVDVPGFLPGVNQEHGGIIRHGAKLLYAYAEATVPKITFITRKAYGGAYDVMSSQHLRGDTNYAWPSAEVAVMGAKGAVQIIFRGSDAEKMARDEEEYVEKFANPFPAAVKGYIDDIISPNETRKKICDDLELLAKKELENPKKKHGNIPL 535
            MA   R ++  ARL   +   R A  S+     +VNE+I+ K+  ALLGGG++RI +QHK+GKLTARER+ LLLD G+F E DM++EH C++FGM     KF GDSVVTG G+INGR V+VFSQDFTVFGGSLS AHA+KICKIMD+A+ +G PVIGLNDSGGARIQEGVESLAGYA IF RNV ASGVIPQISLIMGPCAGGAVYSPA+TDFTFMVKDTSYLFITGPDVVK+VT+EDVT E+LGGAK HT +SGVA  AF+ND+ A+  LR+FFN+LPLS++D +P     DP DRL P L++I+P +  K Y+M  ++ SV D  E FEIMP +A+NI++GFARMNG+TVG VGNQP   +GCLDI +S K ARFVRF DAFNIP++TFVDVPGFLPG  QE+GGIIRHGAKLLYA+AEATVPK+T ITRKAYGGAYDVMSS+HL GDTNYAWP+AE+AVMGAKGAV+IIF+G   E +   + EY+EKFANPFPAAV+G++DDII P+ TR +IC DL++LA K+++ P +KH NIPL
Sbjct:    1 MAAALRVAAVGARLSVLASGLRAAVRSLCSQATSVNERIENKRRTALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFVESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRAFENDVDALCNLRDFFNYLPLSSQDPAPVRECHDPSDRLVPELDTIVPLESTKAYNMVDIIHSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGH--ENVEAAQAEYIEKFANPFPAAVRGFVDDIIQPSSTRARICCDLDVLASKKVQRPWRKHANIPL 539

The following BLAST results are available for this feature:

BLAST of TCONS_00007062-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00007062-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PCCB	0.000e+0	67.65	Propionyl-CoA carboxylase beta chain, mitochondria...	[more]

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TCONS_00007062-protein (polypeptide) - C. hemisphaerica