TCONS_00006995-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006995-protein
Unique NameTCONS_00006995-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006995-protein ID=TCONS_00006995-protein|Name=TCONS_00006995-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
VSNIKKEQIKIKSGKKTMVVRRFCDLNVQESSSYVDNLENIKQLVSLGYT
VVALNRHYGLPKKEKEKNKRSPNEISTAEEAKKFVAQAKQLHDRLKADIE
KLRSNQVGQSKSNTENDLVIPEKFQLLSRLTFDLDHVDQLSYLRSHSNKT
IMAAFDVIAVNPKCEKCFRSLMEGKLDFDIVSFTMADRLPFRLDHHQVGL
GTSKGLVFEIAYTTAIKSQSLRKYVFSNSQNLTSKTKHGKGIIITSGGES
KMDFRAPPDVANLSNLFGLKGSFGLDAVSNTAMKAVTHALLRRDTFKGAV
KVEYVGENTCEGEIKNEEGSPKKKMKV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003915XLOC_003915Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006995TCONS_00006995Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002738RNase_P_p30
IPR016195Pol/histidinol_Pase-like
Vocabulary: Molecular Function
TermDefinition
GO:0004540ribonuclease activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008033 tRNA processing
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004540 ribonuclease activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 78..105
NoneNo IPR availableGENE3D3.20.20.140coord: 25..291
e-value: 2.7E-42
score: 144.1
IPR002738RNase P subunit p30PFAMPF01876RNase_P_p30coord: 24..279
e-value: 3.2E-41
score: 141.1
IPR016195Polymerase/histidinol phosphatase-likeSUPERFAMILY89550PHP domain-likecoord: 38..69
coord: 124..284

Blast
[Close]
BLAST of TCONS_00006995-protein vs. Swiss-Prot (Human)
Match: RPP30 (Ribonuclease P protein subunit p30 OS=Homo sapiens GN=RPP30 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.274e-30
Identity = 86/278 (30.94%), Postives = 132/278 (47.48%), Query Frame = 0 
Query:   23 FCDLNVQESSSYVDNLENIKQLVS----LGYTVVALNRHYGLPKKEKEKNKRSPNEISTAEEAKKFVAQAKQLHDRLKADIEKLRSNQVGQSKSNTENDLVIPEKFQLLSRLTFDLDHVDQLSYLRSHSNKTIMAAFDVIAVNPKCEKCFRSLMEGKLDFDIVSFTMADRLPFRLDHHQVGLGTSKGLVFEIAYTTAIKSQSLRKYVFSNSQNLTSKTKHGKGIIITSGGESKMDFRAPPDVANLSNLFGLKGSFGLDAVSNTAMKAVTHALLRRDTF 296
            F DL+++  S    +L+ ++ LV     LGY+VVA+N       KEK++    P  +S                       E   +  + Q KS            ++L+RLT  +      + LR+ S++  +  +DV+AV PK EK F  +    LD D+V  T+ ++LPF      + +   +GL FE+ Y+ AIK  ++R+Y  S++ NL    K GK +II+S  E  ++ R P DVANL  LFGL  S    AVS     A+ H   R+  F
Sbjct:    4 FADLDLRAGS----DLKALRGLVETAAHLGYSVVAINHIVDF--KEKKQEIEKPVAVS-----------------------ELFTTLPIVQGKSR---------PIKILTRLTIIVSDPSHCNVLRATSSRARL--YDVVAVFPKTEKLFH-IACTHLDVDLVCITVTEKLPFYFKRPPINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQICK-GKNVIISSAAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAF 239
The following BLAST results are available for this feature:
BLAST of TCONS_00006995-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPP301.274e-3030.94Ribonuclease P protein subunit p30 OS=Homo sapiens... [more]
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