TCONS_00006950-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006950-protein
Unique NameTCONS_00006950-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006950-protein ID=TCONS_00006950-protein|Name=TCONS_00006950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=603bp
MDESKLVEDEAMSEGELSEDESMQESPNAKSPPKISIQFSKHPKNVREFA
AKIRKIERKIMLGLLTDVEESKLRSSKYFSQRFEKLLNLSSNNKKCNLYK
LVTSISLNEPMIEELQKKKGALPLRKKIQNKINSLGLREKNVQEKVSSGT
LSQNDVDSFLRDMYFNVNFGEVVLDHPPNSQQAEEASLAPLQQTEDLLCD
YCQQNSKKNQFGQPEDLLICKDCSNKAHPSCLSYSQELVEQIRSDSSWQC
IDCKACSICDGTGDPDTLLFCDACDKGYHMQCHTPKLEQTPSGKWACATC
ISKGKSVTSTSSTKQVLVIDDNDGSVGSSNDTKDELPTPQSSDDTMIAVN
SITTVSSMEVMPIVSAPRRAVDPTPSASLQSSKVATPPIISVKPSNFVYH
PSGLTYAPLPPGSSAVTLPPGHHPVSMPQPQFIPVNYMLPNGVPAAHQPP
HGVPVQASRGVTPMIQPPPAHVVGTAPIPNQPTAAVAPQTQSVMGKGVRN
DLSHILNPKVPLPDVRSSIRDDVLRALPTDVADWTVQNVAYYFKAHGYIH
ESKLLEEQEIDGRAMLLMSRNDCLTGLRIKLGPALKIYHMHIHKLQKKTD
FLG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003884XLOC_003884Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006950TCONS_00006950Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR001660SAM
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD
IPR013761SAM/pointed
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 198..254
e-value: 3.2E-5
score: 33.4
coord: 255..301
e-value: 1.5E-10
score: 51.1
IPR001660Sterile alpha motif domainSMARTSM00454SAM_4coord: 531..598
e-value: 0.0056
score: 25.9
NoneNo IPR availableGENE3D1.10.150.50coord: 522..600
e-value: 1.4E-12
score: 47.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 320..343
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availableCDDcd15527PHD2_KAT6A_6Bcoord: 255..300
e-value: 1.22137E-24
score: 96.2929
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 192..254
e-value: 6.3E-9
score: 35.0
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 255..304
e-value: 3.6E-14
score: 51.8
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 256..302
e-value: 1.0E-11
score: 44.4
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 196..256
score: 9.704
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 253..303
score: 9.988
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 244..305
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 188..255
IPR013761Sterile alpha motif/pointed domainSUPERFAMILY47769SAM/Pointed domaincoord: 528..590

Blast
[Close]
BLAST of TCONS_00006950-protein vs. Swiss-Prot (Human)
Match: REQU (Zinc finger protein ubi-d4 OS=Homo sapiens GN=DPF2 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.139e-27
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 0 
Query:  199 CDYCQQNSKKNQ-FGQPEDLLICKDCSNKAHPSCLSYSQELVEQIRSDSSWQCIDCKACSICDGTGDPDTLLFCDACDKGYHMQCHTPKLEQTPSGKWACATCI 301
            CD+C  +SK N+  GQPE+L+ C DC    HPSCL ++  ++  +++   WQCI+CK C+IC  + + D LLFCD CD+GYHM C TP + + P G W+C  C+
Sbjct:  273 CDFCLGDSKINKKTGQPEELVSCSDCGRSGHPSCLQFTPVMMAAVKT-YRWQCIECKCCNICGTSENDDQLLFCDDCDRGYHMYCLTPSMSEPPEGSWSCHLCL 375
The following BLAST results are available for this feature:
BLAST of TCONS_00006950-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
REQU1.139e-2746.15Zinc finger protein ubi-d4 OS=Homo sapiens GN=DPF2... [more]
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