TCONS_00006758-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006758-protein
Unique NameTCONS_00006758-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length676

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006758-protein ID=TCONS_00006758-protein|Name=TCONS_00006758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=676bp
MNFLIFVVLSHTFLLCQGLPNITITVPENSVLDFFLAQLNPGPNATYALQ
NFKDKFYINDNNQLLTNGILDFETKTFYELSIKVEPDQSESFFVKVRVTD
VNDNRPVFTQNTYSFETVFDTSPSAQSIRIGEVRATDMDASSDFRVINYE
ILPSNSVFYLQSPTTPVIYAQAGQIQLNGERSRVYEITLSARDIPKEFNV
LTTAKIQIQMTSSASPITTNPPTQPDFKVAWVYTTFSIPESSPYDFQITP
ANPNFRTHYQLKASSDQDAFAINEKGALVLRRKLDYEKTQRIELTFTNKT
NLDSISIYNYIMVLDITDVNDNPPTLKVSPVFPRITTNFPKGSLVSHVGV
QDLDSVSKTFTFSINNGDPKKLFTIDDQGSIYTTQCLGTDAVGQYRLGIR
VKDGVFIANKTLMVQIHKASDKDFDNNCGLECNPITFSVTSTANGDVTFT
NVEQNGQILNQTQLQTIVGDPQSTEYSDLSNGIQTSLVEFFERKYSLVRL
NVTNMTIVDQLQKRQRRSADPEAFLSAQYIFEVKTTDATLQELNPISQNE
TIEFTKSSKYRLQTNDQLSVVSDVDECQTNLDQCDVNAYCMIYPNVISYT
CQCKDQYEGDGFECNKIVDKVDKNLMIAIGVSIGGGVLLIIVVVLVVVYC
KNKSRYLRDLKRLNANTQAGMPLTKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003779XLOC_003779Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006758TCONS_00006758Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002126Cadherin
IPR024731EGF_dom
IPR020894Cadherin_CS
IPR000742EGF-like_dom
IPR015919Cadherin-like
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005886plasma membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0007156homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007155cell adhesion
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
biological_process GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules
cellular_component GO:0016020 membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002126CadherinPRINTSPR00205CADHERINcoord: 106..119
score: 31.22
coord: 308..325
score: 34.34
coord: 274..300
score: 23.96
coord: 87..106
score: 40.93
IPR002126CadherinSMARTSM00112CA_2coord: 348..424
e-value: 0.11
score: 13.5
coord: 241..324
e-value: 0.16
score: 11.9
coord: 35..106
e-value: 7.2E-4
score: 28.9
NoneNo IPR availableGENE3D2.60.350.10coord: 208..326
e-value: 5.0E-11
score: 41.8
coord: 17..116
e-value: 4.3E-18
score: 64.9
NoneNo IPR availableGENE3D2.60.40.60coord: 327..419
e-value: 2.4E-14
score: 53.1
NoneNo IPR availableGENE3D2.10.25.10coord: 542..579
e-value: 0.094
score: 12.6
coord: 602..625
e-value: 0.0096
score: 15.8
NoneNo IPR availableGENE3D2.10.25.10coord: 580..601
e-value: 1.1E-6
score: 28.1
NoneNo IPR availableGENE3D2.60.40.60coord: 117..207
e-value: 3.4E-11
score: 43.1
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 117..227
score: 9.804
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 230..332
score: 11.843
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 335..436
score: 11.383
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 33..108
score: 13.049
NoneNo IPR availableCDDcd00054EGF_CAcoord: 573..610
e-value: 1.48094E-4
score: 39.157
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 235..322
e-value: 1.10413E-7
score: 49.2342
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 22..104
e-value: 5.53384E-11
score: 58.8641
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 338..417
e-value: 2.96324E-7
score: 47.6934
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 129..209
e-value: 1.01499E-4
score: 39.9894
IPR024731EGF domainPFAMPF12947EGF_3coord: 577..614
e-value: 7.5E-8
score: 32.3
IPR020894Cadherin conserved sitePROSITEPS00232CADHERIN_1coord: 96..106
IPR020894Cadherin conserved sitePROSITEPS00232CADHERIN_1coord: 314..324
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 573..613
score: 13.936
IPR015919Cadherin-likeSUPERFAMILY49313Cadherin-likecoord: 319..416
IPR015919Cadherin-likeSUPERFAMILY49313Cadherin-likecoord: 235..326
IPR015919Cadherin-likeSUPERFAMILY49313Cadherin-likecoord: 22..115
IPR015919Cadherin-likeSUPERFAMILY49313Cadherin-likecoord: 96..248

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006758-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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