TCONS_00006733-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006733-protein
Unique NameTCONS_00006733-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1193

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006733-protein ID=TCONS_00006733-protein|Name=TCONS_00006733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1193bp
MALYAAATLDSIPHVISSNGFVQVMKFGSSSSSSSESEDEKEEETQKQKS
KVRPLLEEPRSLTPNDDNDDESYEKSQAADLDQLYATVDKTQTKAHKSKT
HKKKLEMEAVLFKAKVTTYLESEEDRSRLFKALRFYHESQDVKKLVKNLK
RILSSEKSHPLFKEIKPLLTVEHVAIYEKLTEPNKNGERLLKITKKRGEE
SYGFSLRGGKEHGLGFFVTAVADGSPAYLTGLKAGDEIRKVNGLPLQETL
HEEFLAILNQNASLTLTVKNVGTIPCKNHDGEIMWNKIDNEEDSDVIANN
ETEDLSRTDRLVSFVVGKEGIGIIIQKKVENHEGVYIISVAENSVAAEVH
LKVGDQILDVNGKSFRDISHSQAVDALRGKSRITMIVRYNEDVYNILSGP
KEIKSILITEPKQEDNGESKKKPKKAKFTNKKNFELIEYDDVEPEYEVDN
EDFIVPSASNFEYPAEILRGREVHFVPVPKIASLDIDLLRRDGYISVIAV
HQGGAVQRHGFIEPGDWIMNVEGDDLYGLPLKTAKEIISAAMKRWSKYIE
FIIACPPGRTPIDLPTKQETVQVLKDPQFTLKSTVSNNSFKDNFDGVKGA
ISAFNGNPVVKRDMSKRKDSLAMTRPKFNQPSSNHHTNNNNNHNNNNEEE
YEEEEKESTKTNSWQDRQQFFNGGNNSLLSSKPTSPIKSNGSSPVKSPVK
SNGVSFANNGQTYSQNANYTSSQKSHNSTSNGSYGSSNGYSKPNSFKNPS
GSSFMGVNNTKNNNDRPPSNRPPSSRPPPKSSPNGIATEENSSSPSKQPF
ILKSQNAPPPPARTSVASSSQRFESQQNSNLTNIRNGLPNEVVMKAKERN
ERNFTPKRPETLQLNRNNTDNTVETSPQNNGVPDRTEVEEAQQDAENSLS
VSAARDMFRKLSPTTETAPESKPKPGKLSRSIFGESTQSSAQTSEKPKVG
KISKSFFEEKQKGNENEKIPPVKSEKKVSKWGKVQTTSSAKNSPSTPQPP
PQSVPSVVSSPVESTLDSTRSTSSQESVLDYTLNLDSSTNQDSSKADLNV
SSPVKEESQSISNEEEMPQGRDRVSSFRDMFQKKXKNTKKKRKKVQRPTV
GKIDNNSSTVATTVFIPQNQRHLSNQTEVLQSNRQSNRTVYRLQITAKLT
ARMPTTRVAKRAIIQHRMDRMDQAMVIQNQTALKIHLAHLSWA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003773XLOC_003773Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006733TCONS_00006733Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 637..657
NoneNo IPR availableGENE3D2.30.42.10coord: 290..405
e-value: 7.3E-18
score: 63.9
NoneNo IPR availableGENE3D2.30.42.10coord: 483..670
e-value: 1.6E-6
score: 27.8
NoneNo IPR availableGENE3D2.30.42.10coord: 187..273
e-value: 1.9E-19
score: 68.8
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 317..388
e-value: 9.88676E-17
score: 76.4514
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 188..269
e-value: 3.99105E-18
score: 80.3034
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 482..557
e-value: 8.9
score: 3.6
coord: 319..391
e-value: 3.6E-17
score: 73.0
coord: 200..272
e-value: 5.3E-14
score: 62.5
IPR001478PDZ domainPFAMPF00595PDZcoord: 317..387
e-value: 7.2E-14
score: 51.8
coord: 193..268
e-value: 1.5E-10
score: 41.1
IPR001478PDZ domainPROSITEPS50106PDZcoord: 190..260
score: 15.521
IPR001478PDZ domainPROSITEPS50106PDZcoord: 311..392
score: 15.199
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 492..557
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 184..275
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 308..396

Blast
[Close]
BLAST of TCONS_00006733-protein vs. Swiss-Prot (Human)
Match: USH1C (Harmonin OS=Homo sapiens GN=USH1C PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 1.726e-37
Identity = 90/285 (31.58%), Postives = 155/285 (54.39%), Query Frame = 0 
Query:  112 FKAKVTTYLESEEDRSRLFKALRFYHESQDVKKLVKNLKRILSSEKSHPLFKEIKPLLTVEHVAIYEKLTEPNKNGERLLKITK--KRGEESYGFSLRGGKEHGLGFFVTAVADGSPAYLTGLKAGDEIRKVNGLPLQETLHEEFLAILNQNASLTLTVKNVGTIPCKNH-DGEIMWNKIDN--EEDSDVI------ANNETEDLSRTDRLVSFVVGKEGIGIIIQKKVENHEGVYIISVAENSVAAEVHLKVGDQILDVNGKSFRDISHSQAVDALRGKSRITM 385
            F+ KV   +E++ ++  L+  LR YH++ DV  LV +LK +++     PLF  I+PL+ ++H   Y++LT P ++  R LK  +  +   E  G S+RGG E G G F++ +  G  A   GL+ GDEI ++NG  +    HEE + ++    ++++ V+++G IP K+  D  + W  +D    E   V        N E    ++  ++   +VG  G+G  I        G++I  V   S++AEV L++GDQI++VNG  F ++ H +AV+ L+    +T+
Sbjct:    9 FRHKVDFLIENDAEKDYLYDVLRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQVEYDQLT-PRRS--RKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRTKKTVSIKVRHIGLIPVKSSPDEPLTWQYVDQFVSESGGVRGSLGSPGNRE----NKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTI 286
The following BLAST results are available for this feature:
BLAST of TCONS_00006733-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
USH1C1.726e-3731.58Harmonin OS=Homo sapiens GN=USH1C PE=1 SV=3[more]
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