TCONS_00006723-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00006723-protein
Unique Name	TCONS_00006723-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1117

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00006723-protein ID=TCONS_00006723-protein|Name=TCONS_00006723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1117bp
MRQMVVTFALLRNCIRQVNSSQFFISSIRSKHQFCLNGSLGVPRRQISSS
YLILTKKMSSTEGENRPPAENDCEEVVKTASQLKKEAKRLAKMEKFAKKQ
EQSKQNKPKEEKPKAKKEKVTTKQVITYDIQTPAGDKKDTKCTLPDAYSP
SYVESAWYSWWEKKGFFKPEYGRESITEKNDKGNFTIVIPPPNVTGNLHL
GHALTGAIEDAVTRWHRMNGKTTLYLPGCDHAGIATQVVVERQLKKEQNL
SRHDLGREKFVEKVWEWKNKKGDRIYHQIRKLGSSVDWERASFTMDEKLS
KAVKETFIRLHDEKLIYRSNRLVNWSCALNSAISDIEVDKKDIGGRTLLS
VPGYEQKIEFGVLIHFTYPVEGSDEKLTVATTRIETMVGDTGIAVHPTDE
RYKHLVGKHALHPFCNRKLLIVGDEAVDPEFGTGAVKITPGHDHNDYEIG
KRHNLRFITMMDDAGLCTDVGDYKDEYKKFIKMKRFVARYEVLNELKAIG
SYVKTEDNAMVVPTCSRSKDIVEPLLKPQWYVDCKEMAAKAVSAVRDGDL
KIIPSMHEKTWYQWMENSRDWCISRQLWWGHRIPAYYVTILGEPSGSDEE
EKYWVSGRSEDEALEKAAKQFNVPKEKIHLRQDEDVLDTWFSSALFPFSV
FGWPDNTDEMEAFYPTSLLETGHDILFFWVARMVMFGQKLTGRLPFKEVY
LHAMVRDAYGRKMSKSLGNIIDPLDVITGISLPDLMGRLNEYNLDPKELE
KAQKGQKEMYPDGIPECGTDAMRFALCAYTLQGRDINLDVLRMQGYRHFC
NKLWNATKFAMRNFTPEFLPRSNLKELSGQETAMDLWILSRLSVAATLCN
EGFQSYEFPKATTALYNFWLYELCDVYLESLKPIFQGDDEKQKICAQNVL
YTCLDAGLRMLSPFMPYVTEELYQRLPHNKETVPESICVASYPKDWNLRN
EAIEKQIEHMMEIVKTIRSKKDEYMSNKSKCLVYVRPHQNYSKEVVEKLN
DVIKTLSQSSEIQLLGEKEEAPGGCAIQLVGDKCEVLLSLKGIVDFTKEI
QKLRVKQEKSEQSVSKLIETTKKDDYETKVPEKVREQNQQKITQLHTEIE
KLKITIDTFEQAAKDAS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003768	XLOC_003768	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00006723	TCONS_00006723	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002303	Valyl-tRNA_ligase
IPR013155	M/V/L/I-tRNA-synth_anticd-bd
IPR014729	Rossmann-like_a/b/a_fold
IPR009080	tRNAsynth_Ia_anticodon-bd
IPR019499	Val-tRNA_synth_tRNA-bd
IPR002300	aa-tRNA-synth_Ia
IPR001412	aa-tRNA-synth_I_CS
IPR033705	Anticodon_Ia_Val
IPR009008	Val/Leu/Ile-tRNA-synth_edit

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0005524	ATP binding
GO:0004832	valine-tRNA ligase activity
GO:0004812	aminoacyl-tRNA ligase activity
GO:0002161	aminoacyl-tRNA editing activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006438	valyl-tRNA aminoacylation
GO:0006418	tRNA aminoacylation for protein translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006418	tRNA aminoacylation for protein translation
biological_process	GO:0006438	valyl-tRNA aminoacylation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0002161	aminoacyl-tRNA editing activity
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004832	valine-tRNA ligase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1085..1112
None	No IPR available	COILS	Coil	Coil	coord: 73..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..120
None	No IPR available	CDD	cd00817	ValRS_core	coord: 185..788 e-value: 0.0 score: 600.773
None	No IPR available	SUPERFAMILY	52374	Nucleotidylyl transferase	coord: 143..342 coord: 767..798 coord: 512..729
IPR002303	Valine-tRNA ligase	PRINTS	PR00986	TRNASYNTHVAL	coord: 185..196 score: 72.22 coord: 396..413 score: 58.23 coord: 517..530 score: 53.97 coord: 633..654 score: 71.72 coord: 664..682 score: 69.59
IPR002303	Valine-tRNA ligase	TIGRFAM	TIGR00422	TIGR00422	coord: 145..1091 e-value: 5.0E-301 score: 998.7
IPR002303	Valine-tRNA ligase	HAMAP	MF_02004	Val_tRNA_synth_type1	coord: 144..1110 score: 13.795
IPR013155	Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding	PFAM	PF08264	Anticodon_1	coord: 835..979 e-value: 6.8E-39 score: 133.2
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	3.40.50.620		coord: 141..777 e-value: 1.7E-135 score: 451.5
IPR009080	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	GENE3D	1.10.730.10		coord: 778..946 e-value: 2.6E-47 score: 160.5
IPR009080	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	SUPERFAMILY	47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	coord: 800..1054
IPR019499	Valyl-tRNA synthetase, tRNA-binding arm	GENE3D	1.10.287.380		coord: 1038..1108 e-value: 6.9E-11 score: 41.5
IPR002300	Aminoacyl-tRNA synthetase, class Ia	PFAM	PF00133	tRNA-synt_1	coord: 157..789 e-value: 1.8E-205 score: 683.7
IPR001412	Aminoacyl-tRNA synthetase, class I, conserved site	PROSITE	PS00178	AA_TRNA_LIGASE_I	coord: 192..203
IPR033705	Valyl tRNA synthetase, anticodon-binding domain	CDD	cd07962	Anticodon_Ia_Val	coord: 788..926 e-value: 3.11525E-61 score: 205.098
IPR009008	Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain	SUPERFAMILY	50677	ValRS/IleRS/LeuRS editing domain	coord: 357..513

Blast

[Close]

BLAST of TCONS_00006723-protein vs. Swiss-Prot (Human)
Match: SYVC (Valine--tRNA ligase OS=Homo sapiens GN=VARS PE=1 SV=4)

HSP 1 Score: 1238.02 bits (3202), Expect = 0.000e+0
Identity = 593/1041 (56.96%), Postives = 761/1041 (73.10%), Query Frame = 0

Query:   78 KTASQLKKEAKRLAKMEKFAKKQEQSKQNKPKEEKPKAKKEKVTT-KQVITYDIQTPAGDKKDTKCTLPDAYSPSYVESAWYSWWEKKGFFKPEYGRESITEKNDKGNFTIVIPPPNVTGNLHLGHALTGAIEDAVTRWHRMNGKTTLYLPGCDHAGIATQVVVERQLKKEQNLSRHDLGREKFVEKVWEWKNKKGDRIYHQIRKLGSSVDWERASFTMDEKLSKAVKETFIRLHDEKLIYRSNRLVNWSCALNSAISDIEVDKKDIGGRTLLSVPGYEQKIEFGVLIHFTYPVEG--SDEKLTVATTRIETMVGDTGIAVHPTDERYKHLVGKHALHPFCNRKLLIVGDEAVDPEFGTGAVKITPGHDHNDYEIGKRHNLRFITMMDDAGLCTDVGDYKDEYKKFIKMKRFVARYEVLNELKAIGSYVKTEDNAMVVPTCSRSKDIVEPLLKPQWYVDCKEMAAKAVSAVRDGDLKIIPSMHEKTWYQWMENSRDWCISRQLWWGHRIPAYYVTI--LGEPSGSDEEEKYWVSGRSEDEALEKAAKQFNVPKEKIHLRQDEDVLDTWFSSALFPFSVFGWPDNTDEMEAFYPTSLLETGHDILFFWVARMVMFGQKLTGRLPFKEVYLHAMVRDAYGRKMSKSLGNIIDPLDVITGISLPDLMGRLNEYNLDPKELEKAQKGQKEMYPDGIPECGTDAMRFALCAYTLQGRDINLDVLRMQGYRHFCNKLWNATKFAMRNFTPEFLPRSNLKELSGQETAMDLWILSRLSVAATLCNEGFQSYEFPKATTALYNFWLYELCDVYLESLKPIFQGDDEKQKICAQNVLYTCLDAGLRMLSPFMPYVTEELYQRLPHNKETVPESICVASYPK--DWNLRNEAIEKQIEHMMEIVKTIRSKKDEYMSNKSKCLVYVRPHQNYSKEVVEKLNDVIKTLSQSSEIQLLGEKEEAPGGCAIQLVGDKCEVLLSLKGIVDFTKEIQKLRVKQEKSEQSVSKLIETTKKDDYETKVPEKVREQNQQKITQLHTEIEKLKITIDTFEQ 1111
            KTA+QLKKEAK+  K+EKF +KQ+  +Q  P  EK    +++      VITYD+ TP G+KKD    +PD+YSP YVE+AWY WWE++GFFKPEYGR +++  N +G F + IPPPNVTG+LHLGHALT AI+D++TRWHRM G+TTL+ PGCDHAGIATQVVVE++L +EQ LSRH LGRE F+++VW+WK +KGDRIYHQ++KLGSS+DW+RA FTMD KLS AV E F+RLH+E +IYRS RLVNWSC LNSAISDIEVDKK++ GRTLLSVPGY++K+EFGVL+ F Y V+G  SDE++ VATTRIETM+GD  +AVHP D RY+HL GK+ +HPF +R L IV DE VD +FGTGAVKITP HD NDYE+G+RH L  I++MD  G   +V         F+ + RF AR  VL  LK  G +   EDN MVVP C+RSKD+VEPLL+PQWYV C EMA  A +AV  GDL+I+P  H++TW+ WM+N R+WCISRQLWWGHRIPAY+VT+     P G D + +YWVSGR+E EA EKAAK+F V  +KI L+QDEDVLDTWFSS LFP S+ GWP+ ++++  FYP +LLETGHDILFFWVARMVM G KLTGRLPF+EVYLHA+VRDA+GRKMSKSLGN+IDPLDVI GISL  L  +L   NLDP E+EKA++GQK  +P GIPECGTDA+RF LCAY  QGRDINLDV R+ GYRHFCNKLWNATKFA+R     F+P S   +  G E+ +D WI SRL+ A  L N+GFQ+Y+FP  TTA Y+FWLYELCDVYLE LKP+  G D+    CA+  LYTCLD GLR+LSPFMP+VTEEL+QRLP      P S+CV  YP+  + + ++   E  +E  + I + +RS + +Y   + +   ++      +  +   ++  ++ L+ +  + +L     AP GCA+ L  D+C + L L+G+VD  +E+ KL+ K+ ++++   +L E      Y  KVP +V+E ++ K+ Q   E+ K+   I  F++
Sbjct:  229 KTAAQLKKEAKKREKLEKFQQKQKIQQQQPPPGEKKPKPEKREKRDPGVITYDLPTPPGEKKDVSGPMPDSYSPRYVEAAWYPWWEQQGFFKPEYGRPNVSAANPRGVFMMCIPPPNVTGSLHLGHALTNAIQDSLTRWHRMRGETTLWNPGCDHAGIATQVVVEKKLWREQGLSRHQLGREAFLQEVWKWKEEKGDRIYHQLKKLGSSLDWDRACFTMDPKLSAAVTEAFVRLHEEGIIYRSTRLVNWSCTLNSAISDIEVDKKELTGRTLLSVPGYKEKVEFGVLVSFAYKVQGSDSDEEVVVATTRIETMLGDVAVAVHPKDTRYQHLKGKNVIHPFLSRSLPIVFDEFVDMDFGTGAVKITPAHDQNDYEVGQRHGLEAISIMDSRGALINVP------PPFLGLPRFEARKAVLVALKERGLFRGIEDNPMVVPLCNRSKDVVEPLLRPQWYVRCGEMAQAASAAVTRGDLRILPEAHQRTWHAWMDNIREWCISRQLWWGHRIPAYFVTVSDPAVPPGEDPDGRYWVSGRNEAEAREKAAKEFGVSPDKISLQQDEDVLDTWFSSGLFPLSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGRLPFREVYLHAIVRDAHGRKMSKSLGNVIDPLDVIYGISLQGLHNQLLNSNLDPSEVEKAKEGQKADFPAGIPECGTDALRFGLCAYMSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKGFVP-SPTSQPGGHESLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYLECLKPVLNGVDQVAAECARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRMPQAPPSLCVTPYPEPSECSWKDPEAEAALELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGALASAVSGYVQALASAGVVAVLALGAPAPQGCAVALASDRCSIHLQLQGLVDPARELGKLQAKRVEAQRQAQRLRERRAASGYPVKVPLEVQEADEAKLQQTEAELRKVDEAIALFQK 1262

The following BLAST results are available for this feature:

BLAST of TCONS_00006723-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00006723-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SYVC	0.000e+0	56.96	Valine--tRNA ligase OS=Homo sapiens GN=VARS PE=1 S...	[more]

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TCONS_00006723-protein (polypeptide) - C. hemisphaerica