|
|
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00006578-protein ID=TCONS_00006578-protein|Name=TCONS_00006578-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1356bp
CPLCMETFEIDDINFFPCTCGYQVCRFCWHRIRTDENGLCPACRKAYSED
PAMYRPLSQDELQKIKKERKQKEVQQKQKTTDSRQHLANIRVIQKHLVFV
VGLSNKMADPEVLKRQEYFGKYGKILKIVINPNTNYAGPQGPSASAYVTY
SKEEEALRTILSINNMQPPLKIRSSLGTTKYCTHYLRNTVCPKMDCMYLH
DLGDMNASFTKEDMQAGKHQLFEKDLLDNYAASVQKARQSHSHSHLTTNH
HGVSEDAQAWSEGENDNTPMLPSNASWASVRDEKDKKPDPPKSKSRNNSM
SIDYPSIEAASSRVSAPVLNSGGRERKDSSSVSSNDKLNTTTTKHSRRKS
SVEKIDVTDNVVSTSTATITVVTTSTTSVIQPPPKTEDKKNKPSSPPPVL
PTQTVTAPPPGITKPVDPQTPQVMKVSPTLPSNIPSSIPTTSTSTASSLP
SLTLNDVTTTTVTTTTTSITSTASATTSYPWPGSIDLGLSDLQIQANDDE
LGFDPFKESKSGLEDLIATERKQAQVTSTTNSTDTKPIAAFSWDSFWPTN
FPQNDTQPAATNTNMAAPGMMAPQNHSYSLFNPQDGVRAQSPNNPYDIQN
KPLANTMPTAASPQHDPSKMSAYPFRFATSPHNAHPPPPGHPLSQYIQQQ
QQMYGQRFPFQQPTIPSPGQAQPLHSFITPSTTAPSAGGRPSATVNPSVN
TSVDKNWQDGLRALLPNINISFASNWNNTPGPQQQPPPPAPGLNADNPSS
PTAANNPLNGSLAQQVAATSQQQQTQQSQQQTPVVQPSPNVASVASPPPG
FGALLGNMESVKNKPPSSWPDRDEQSQPQPPTQAPPQTRIPPPPPGFRSP
VATVAAEPFVTTPTTTSSSKTASTTNNILTTVAATHTTSSAKAIPQPSHN
HQQQQQQNKRHSQHYGSHEDPSILWSKVLSDKPTREIETTSMLFPLPGET
VDQALSSASLPATPPQNNQQSHLMSWNSVVSGNQYGKSPTSRDMMEPCTV
NTKDTKDNTSQKPQKPSPIFGNQQKNAVKKPTAHVKPLKCNPPNDGFTTV
HNSSTTRSNTQNQQTVDANLHTGSRVSELDDFSADLPSNVNVNLTANIVS
NSIVDYPPVAAQVSGNPSSKSKKKKRKGKEQPGLVSEVVVGFATSVTLDR
PPPLESTAIVDDERPTKKKNKKKNKSNSVSPPSQRKSTDNTSQEKNKDHF
RGVMKVEIGGAAQAVAGSSSFNVQQQQQLPASHEHDIAVSRLTESTEKLL
KNVLFETEAIKLNTEQISKDLKSALEKCKESSLSLSDLEKINLLLTPGKI
ANSDLDDPDLVDTTDLERQVESARREAKLLEARLNDVIRKNMASELETLK
RNTKSS Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 1313..1340 |
| None | No IPR available | PFAM | PF14570 | zf-RING_4 | coord: 1..48
e-value: 7.2E-19
score: 67.2 |
| None | No IPR available | GENE3D | 3.30.70.330 | | coord: 73..184
e-value: 1.7E-9
score: 37.1 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 233..352 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 375..448 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 659..701 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 724..929 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1147..1199 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1109..1132 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 980..1064 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 608..644 |
| None | No IPR available | SUPERFAMILY | 57850 | RING/U-box | coord: 1..62 |
| IPR003954 | RNA recognition motif domain, eukaryote | SMART | SM00361 | rrm2_1 | coord: 97..175
e-value: 2.3E-10
score: 50.4 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 1..72
e-value: 9.6E-13
score: 47.1 |
| IPR001841 | Zinc finger, RING-type | PROSITE | PS50089 | ZF_RING_2 | coord: 1..44
score: 9.981 |
| IPR001841 | Zinc finger, RING-type | CDD | cd00162 | RING | coord: 1..45
e-value: 3.17191E-4
score: 39.3512 |
| IPR034261 | CNOT4, RNA recognition motif | CDD | cd12438 | RRM_CNOT4 | coord: 91..187
e-value: 1.12406E-48
score: 168.872 |
| IPR000504 | RNA recognition motif domain | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 90..166 |
Blast
BLAST of TCONS_00006578-protein vs. Swiss-Prot (Human)
Match: CNOT4 (CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4 PE=1 SV=3) HSP 1 Score: 372.089 bits (954), Expect = 8.724e-115 Identity = 160/228 (70.18%), Postives = 199/228 (87.28%), Query Frame = 0
Query: 1 CPLCMETFEIDDINFFPCTCGYQVCRFCWHRIRTDENGLCPACRKAYSEDPAMYRPLSQDELQKIKKERKQKEVQQKQKTTDSRQHLANIRVIQKHLVFVVGLSNKMADPEVLKRQEYFGKYGKILKIVINPNTNYAGPQGPSASAYVTYSKEEEALRTILSINNMQPPLK-IRSSLGTTKYCTHYLRNTVCPKMDCMYLHDLGDMNASFTKEDMQAGKHQLFEKDLL 227
CPLCME EIDDINFFPCTCGYQ+CRFCWHRIRTDENGLCPACRK Y EDPA+Y+PLSQ+ELQ+IK E+KQK+ ++KQK +++R+HLA++RV+QK+LVFVVGLS ++ADPEVLKR EYFGK+GKI K+VIN +T+YAG QGPSASAYVTY + E+ALR I +NN+ + +++SLGTTKYC+++L+N CPK DCMYLH+LGD ASFTKE+MQAGKHQ +E+ LL
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
The following BLAST results are available for this feature:
|
