TCONS_00006338-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00006338-protein
Unique Name	TCONS_00006338-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	342

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00006338-protein ID=TCONS_00006338-protein|Name=TCONS_00006338-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
MKYGAGGRLSFNGNVATVFGATGFLGRYVVNRLAKTGTQIIVPFRGVDED
IRHLRVMGDLGQIVFLEYDIRDEEAVARAMSHSNVVINLIGKNHSTRNFS
LEDVNVKAVETIAGAATKQGVDRLVHVSALGAEGRSPSKVFQLKAQGERV
LTDLFPQATIVRPAECYGHEDDYFNRYAYLRKLPLGVPLVDGGWKTTKRP
VYIGDVAQGVVNASLDADSKGRTFELYGPEEYYLHDMVEFIFKSIRKPFR
SFPVPAIAYSVAGFLGEKSIFSPRLTRDQAIRQFLTDEVADDSYTFEDLN
VTPGNMSSTALTVLRRHRDYYHHDEIMDEEKDYCPPVSTYIS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003611	XLOC_003611	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00006338	TCONS_00006338	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR016040	NAD(P)-bd_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016040	NAD(P)-binding domain	PFAM	PF13460	NAD_binding_10	coord: 20..163 e-value: 1.0E-13 score: 51.5
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 15..269
None	No IPR available	GENE3D	3.40.50.720		coord: 6..327 e-value: 8.3E-32 score: 110.1
None	No IPR available	CDD	cd05271	NDUFA9_like_SDR_a	coord: 15..287 e-value: 4.45202E-107 score: 316.109

Blast

[Close]

BLAST of TCONS_00006338-protein vs. Swiss-Prot (Human)
Match: NDUA9 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Homo sapiens GN=NDUFA9 PE=1 SV=2)

HSP 1 Score: 285.034 bits (728), Expect = 3.443e-94
Identity = 148/320 (46.25%), Postives = 207/320 (64.69%), Query Frame = 0

Query:    1 MKYGAGGRLSFNGNVATVFGATGFLGRYVVNRLAKTGTQIIVPFRGVDEDIRHLRVMGDLGQIVFLEYDIRDEEAVARAMSHSNVVINLIGKNHSTRNFSLEDVNVKAVETIAGAATKQGVDRLVHVSALGAEGRSPSKVFQLKAQGERVLTDLFPQATIVRPAECYGHEDDYFNRYAYLRKLPLGVPLVDGGWKTTKRPVYIGDVAQGVVNASLDADSKGRTFELYGPEEYYLHDMVEFIFKSIRKPFRSFPVPAIAYSVAGFLGEKSIFSPRLTRDQAIRQFLTDEVADDSYTFEDLNVTPGNMSSTALTVLRRHRDY 320
            M +G GGR S +G VATVFGATGFLGRYVVN L + G+Q+I+P+R    DI HLR MGDLGQ++FLE+D RD++++ R + HSNVVINLIG++  T+NF  EDV VK  + IA  + + GV++ +HVS L A  +S S+  + KA GE+V+ D FP+A IV+P++ +G ED + N +A + +    +PL   GWKT K+PVY+ DV++G+VNA  D D+ G++F   GP  Y L  +V++IF    + F  FP+P  AY     + E S F P +TRD+  R  +TD         EDL +    +   A+ VLRRHR Y
Sbjct:   41 MPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDWETKNFDFEDVFVKIPQAIAQLSKEAGVEKFIHVSHLNANIKSSSRYLRNKAVGEKVVRDAFPEAIIVKPSDIFGREDRFLNSFASMHRFG-PIPLGSLGWKTVKQPVYVVDVSKGIVNAVKDPDANGKSFAFVGPSRYLLFHLVKYIFAVAHRLFLPFPLPLFAYRWVARVFEISPFEPWITRDKVERMHITDMKLPHLPGLEDLGIQATPLELKAIEVLRRHRTY 359

The following BLAST results are available for this feature:

BLAST of TCONS_00006338-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00006338-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NDUA9	3.443e-94	46.25	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex...	[more]

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TCONS_00006338-protein (polypeptide) - C. hemisphaerica