TCONS_00006313-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006313-protein
Unique NameTCONS_00006313-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1372

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006313-protein ID=TCONS_00006313-protein|Name=TCONS_00006313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1372bp
MAFANQLYLLLWKNYTLKKRKPLIFMAELTVPLVLFLILVIIRQHRPPDE
ASIATWAPLAMPSAGIVPLLQSFCPHRGYKKNGYLAFPGSKIELVIKDVA
DLANTPLFDAIHGLKKFEEDFEDFQKNPSFSNIRNIKDIKFSDLLKKDSD
FVEYLERNLSMSSQMADAFMNATFNGSEISSILLERNDGFVQHYLQQIVS
KKAPTFSNLRRLQQSTFLQTMFDPTSLLFGPTWLGFLASVANVPGLSIGK
PNLNSLEEVFKDIFLNQSEIRYLSCDQEVFNQLITLSTEYKNRHKKHMEK
DQLQEFLCNLTNAQDASLAGELQRAINWTAVLTQFHTDGPSMEMYEKKAK
VIRDDMMKFLELEDAFGKLIKLSDDLNVNVTEISNALNNSKSEEFTQNAI
KLWKILSPVLCGEKNSAWEGRSIEQSMVDFMAGLKGDYESHYAFEFMMYV
LTHDAMVLYAPNGTEADQVMEKAGHILKVIKDTKRLAQKWLELSAKLDLF
LTKNQTQVWLKRLLKSINDFPFMFDPHLSDVTEGSPLYETLPKNIQELIH
QYNGSIFKEIARLQQQRKAGVTDTFNNVTKDDVIDYLRRKNATEWLQVET
VRENLKKGIEMMIAKPNNKSTEITHKDIQLLTELDKIDYMAEGWQAVLKP
MKLDLFYGFPNETMLNRYIQNRTRSNSGKTQFLSAVLFDNIEKNGRLPKH
LHYRIRMDSRIMFPTANIREPFWRPGPLAGNSKYYYFGFAWMQDSLERAM
IELMTGRNVSQPGLYIQEIPYPCYLGDNFLFMIQYIMPLCVVISFIYSVA
ILVQSIVYEKEQRLKEVMKMMGLSNTXSFIYSVAILVQSIVYEKEQRLKE
VMKMMGLSNTVHWAAWFITSIVGMLTIVILLTIVLKTGHILPNSNSYIIF
VFLTLAAIATIMFCFLISIFFSKAKLAAACGGIIYFVTYMPYIFISIQEG
GSNHIDVSSNFKTVASLFSTTAFGLGARYFALFEQNGVGLQWSNLSMSPL
EGDDFNMRKVFTMLLADTFIYAILVWYIESIHPGTYGIPRPWYFPFQLSY
WFGPQASLDCEMDCFKKSYKMAGNSEQNTAALLAVETEPTHLKLGVAIKN
LLKIYKKGSQPAIDHLSLNLYENQITSFLGHNGAGKTTTMSLLTGLFPST
SGTAYIYGKDIHTDMDSVRKSLGLCPQHNILYDRLTVEESLWFYARLKGM
SDKKQVKYEIEKVLDDVGLSEKSNSFVDTLSGGMKRKLSVAIAFVGGSRT
VILDEPTAGVDPYARRAIWELLEKYKDGRTILLSTHFMDEADILGDRIAI
ISHGKLRCVGSSLFLKTKFGDGYHLTLDKEPESRVAANSITKFIKAYASN
AQMICETXKIHQSLCFKHSNDL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003602XLOC_003602Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006313TCONS_00006313Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR003439ABC_transporter-like
IPR017871ABC_transporter_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0016887ATPase activity
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016887 ATPase activity
molecular_function GO:0005524 ATP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 1122..1319
e-value: 6.4E-6
score: 35.7
IPR003439ABC transporter-likePFAMPF00005ABC_trancoord: 1114..1258
e-value: 1.8E-27
score: 96.4
IPR003439ABC transporter-likePROSITEPS50893ABC_TRANSPORTER_2coord: 1096..1328
score: 18.541
NoneNo IPR availableGENE3D3.40.50.300coord: 1093..1367
e-value: 3.8E-63
score: 213.2
NoneNo IPR availablePFAMPF12698ABC2_membrane_3coord: 829..1027
e-value: 6.0E-19
score: 68.3
NoneNo IPR availableCDDcd03263ABC_subfamily_Acoord: 1098..1316
e-value: 7.79253E-110
score: 345.644
IPR017871ABC transporter, conserved sitePROSITEPS00211ABC_TRANSPORTER_1coord: 1230..1244
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1108..1310

Blast
BLAST of TCONS_00006313-protein vs. Swiss-Prot (Human)
Match: ABCA2 (ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3)

HSP 1 Score: 782.326 bits (2019), Expect = 0.000e+0
Identity = 378/713 (53.02%), Postives = 497/713 (69.71%), Query Frame = 0
Query:  628 IQLLTELDKIDYMAEGWQAVLKPMKLDLFYGFPNETMLNRYIQNRTRSNSGKTQFLSAVLFDNIEKNGRLPKHLHYRIRMDSRIMFPTANIREPFWRPGPLAGNSKYYYFGFAWMQDSLERAMIELMTGRNVSQPGLYIQEIPYPCYLGDNFLFMIQYIMPLCVVISFIYSVAILVQSIVYEKEQRLKEVMKMMGLSNTXSFIYSVAILVQSIVYEKEQRLKEVMKMMGLSNTVHWAAWFITSIVGMLTIVILLTIVLKTGHILPNSNSYIIFVFLTLAAIATIMFCFLISIFFSKAKLAAACGGIIYFVTYMPYIFISIQEGGSNHIDVSSNFKTVASLFSTTAFGLGARYFALFEQNGVGLQWSNLSMSPLEGDDFNMRKVFTMLLADTFIYAILVWYIESIHPGTYGIPRPWYFPFQLSYWFGPQASLDCEMD-CFKKSYKMAGNSEQNTAAL--------LAVETEPTHLKLGVAIKNLLKIYKKGSQPAIDHLSLNLYENQITSFLGHNGAGKTTTMSLLTGLFPSTSGTAYIYGKDIHTDMDSVRKSLGLCPQHNILYDRLTVEESLWFYARLKGMSDKKQVKYEIEKVLDDVGLSEKSNSFVDTLSGGMKRKLSVAIAFVGGSRTVILDEPTAGVDPYARRAIWELLEKYKDGRTILLSTHFMDEADILGDRIAIISHGKLRCVGSSLFLKTKFGDGYHLTLDKEP 1331
            + LL +LD ID  A GW   +  + +D+F GF +E  +  Y  N+   ++      ++V+F    K+G LP H+HY+IR +S     T  IR  +WRPGP  G   Y+ +GF W+QD +ERA+I+   G +V +PG Y+Q  PYPCY  D+FLF+I+++MPLC+VIS+                                  +YSVA+ +Q IV EKE RLKEVMK MGL+N VHW AWFIT  V +   V  LT +LK G +L +S+  II++FL + A+ATIMFCFL+S+ +SKAKLA+ACGGIIYF++Y+PY++++I+E  + H  +++  K +ASL STTAFGLG++YFAL+E  GVG+QW   S SP+EGDDFN+    TML+ D  +Y IL WYIE++HPG YG+PRPWYFP Q SYW G   +   E    + ++ +++   E    A+          +E EPTHL L V +  L K+YK   + A++ LSLNLYENQ+ SFLGHNGAGKTTTMS+LTGLFP TSG+A IYG DI T+MD +RK+LG+CPQHN+L+DRLTVEE LWFY+RLK M+ +++++ E++K+++D+ LS K +S V TLSGGMKRKLSVAIAFVGGSR +ILDEPTAGVDPYARRAIW+L+ KYK GRTILLSTH MDEAD+LGDRIAIISHGKL+C GS LFLK  +GDGY LTL K P
Sbjct:  551 MALLQQLDTIDNAACGWIQFMSKVSVDIFKGFHDEESIVNYTLNQAYQDN--VTVFASVIFQT-RKDGSLPPHVHYKIRQNSSFTEKTNEIRRAYWRPGPNTGGRFYFLYGFVWIQDMMERAIIDTFVGHDVVEPGSYVQMFPYPCYTRDDFLFVIEHMMPLCMVISW----------------------------------VYSVAMTIQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITGFVQLSISVTALTAILKYGQVLMHSHVVIIWLFLAVYAVATIMFCFLVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVA-HDKITAFEKCIASLMSTTAFGLGSKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLAVTMLMVDAVVYGILTWYIEAVHPGMYGLPRPWYFPLQKSYWLGSGRTEAWEWSWPWARTPRLSVMEEDQACAMESRRFEETRGMEEEPTHLPLVVCVDKLTKVYKDDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMA-QEEIRREMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGTYGDGYRLTLVKRP 1224          

HSP 2 Score: 191.815 bits (486), Expect = 5.866e-49
Identity = 101/236 (42.80%), Postives = 150/236 (63.56%), Query Frame = 0
Query: 1096 VAIKNLLKIYKK---GSQPAIDHLSLNLYENQITSFLGHNGAGKTTTMSLLTGLFPSTSGTAYIYGKDIHTDMDSVRKSLGLCPQHNILYDRLTVEESLWFYARLKGMSDKKQVKYEIEKVLDDVGLSEKSNSFVDTLSGGMKRKLSVAIAFVGGSRTVILDEPTAGVDPYARRAIWEL-LEKYKDGRTILLSTHFMDEADILGDRIAIISHGKLRCVGSSLFLKTKFGDGYHLTL 1327
            V I+NL K+YK    G   A+D L L +   +    LG NGAGKT+T  +LTG   +T G A++ G  +  ++  V++SLG CPQ + L+D LT  E L  Y RL+G+S K + +  ++  L+ + L++ ++    T SGG KRKLS AIA +G    + LDEPT G+DP ARR +W L L+  K GR+++L++H M+E + L  R+AI+ +G+LRC+GS   LK +FGDGY +T+
Sbjct: 2050 VKIENLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKELLQVQQSLGYCPQCDALFDELTAREHLQLYTRLRGISWKDEARV-VKWALEKLELTKYADKPAGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITV 2284          

HSP 3 Score: 90.5077 bits (223), Expect = 4.892e-18
Identity = 55/193 (28.50%), Postives = 92/193 (47.67%), Query Frame = 0
Query:    1 MAFANQLYLLLWKNYTLKKRKPLIFMAELTVPLVLFLILVIIRQHRPPDEASIATWAPLAMPSAGIVPLLQSFCPHRGYKKNGYLAFPGSKIELVIKDVADLANTP-LFDAIHG-----LKKFEEDFEDFQKNPSFS----NIRNIKDIKFSDLLKKDSDFVEYLERNLSMSSQMADAFMNATFNGSEISSIL 183
            M F +QL LLLWKN TLK+R P +   E+ +PLVLF IL+ +RQ +P      A +    + SAGI+P++QS CP     + G+L +  S +  +++ +  +     LFD         L+   +  E     P  S    +   +       + +   +   +L +NLS+ +  A A + A  +  E+  +L
Sbjct:    1 MGFLHQLQLLLWKNVTLKRRSPWVLAFEIFIPLVLFFILLGLRQKKPTISVKEAFYTAAPLTSAGILPVMQSLCPDGQRDEFGFLQYANSTVTQLLERLDRVVEEGNLFDPARPSLGSELEALRQHLEALSAGPGTSGSHLDRSTVSSFSLDSVARNPQELWRFLTQNLSLPNSTAQALLAARVDPPEVYHLL 193          
The following BLAST results are available for this feature:
BLAST of TCONS_00006313-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ABCA25.866e-4953.02ATP-binding cassette sub-family A member 2 OS=Homo... [more]
back to top