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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00006285-protein ID=TCONS_00006285-protein|Name=TCONS_00006285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1547bp
MSFIKSFEKLGVKSSSNVGTFDFMKEVKSTSKNLLTNKNEEIVQVKQKIE
DIKDEAFGISVPVYKANELMQEIEAEKALLKELQSQYDVYEKFVDKVLDD
CLLTEDLTELQQSFELESKRFEASLPIYAKKNEIIETVDKWPVTILTAET
GSGKSTQVVQYLQQSHPDATIVCTQPRKVAAMSLANRVSEELETDVGDLV
GYCVGARADCGPGTRIVYMTDHMLLNECLNDPNLSKYEYVIVDEAHERSI
STDLLLAMIKKAIVKRRGNLKLVISSATIDPTIFSDYFLGFSKRLHVSGR
TYPVEALYEKVTIGMNYLQVSVTKAKELHKNEDLDGDVLVFLTTPAEIER
AQELMNADPIMSAGVQCLVLHGRLQPEDQQLVFKPTRKGKRKIVFATNSA
ETSITIPNIKYVIDSGMVKEKHYDREKNASLLTVRPVNKSSAEQRMGRAG
RTQPGKCYRLYIEEEYREMQDEMLPEILRENLGLAMLKLYEFDIGDPFKY
DFVQAPPEQALMLAKQELKDLGAIKGNRLTNYGKMMAKLDIEPKLGKFVS
LCIEEGYGYDAMVIAAVCSIGGSVFFRVGTEDVKQLSDRLKTRFCDIDGD
LYTYLEVYKQWSEAPETQKNSWCVANSMNAKSLRFTRDLINDMVKNVKPL
GHAILKRFHDLEEVKEIVPKYLTQCFPASLAYYSGHPRGGYYITGYEPER
FYMHPSAALSFLNRYPKWILFTEILTTSRTYLINTIDIPEWLANRVNTKS
VQCCKQWIVGREMSKALGFGKVHCHIEKKLQSDISQNIYIDFDSNNGKVS
LFSTPEFKYEAVSVLSKVIDFERKCLANRPLEIPLSDHNTTCVVIGQGGA
CSTLLYSGEFSGLLIRGLAEDVERNHVEDALKVFGKVVDVVKFFKSYWWG
KIIFAEPQSAVNALRMWKQRLNLDPEFDKAYFKAAFNQNISQSGSGNQSC
GLKATWTRRPAKGDFAFVQFQNQTMFDEICGTSKYISGKHYTFKRSPREP
LSVKMIGISQHASQEELKLSIENQFPHIVVTKCIIPRQPPVPVENQAEMD
IKKRQLINLIRRSVDDAKTFRVEMKPVAAEQEVDYEAKIWFTNARDCHAV
LNSNVAMGLANVRFTPELKSTPIHLPVTVYFYVKTELEDYFKRMRNVKMK
ENNSKRNNTVEIVIEAKKIEDLRDASRFLHTLAKGEQVQCSERQFRYFMT
PLGREFIQGLKLRYTCDIRIEPRQRAIVIFGLAKERKQLKEEVEKEKLAH
DTNDEIWIENFNQKPIGFIKHLIKKYGISLDRLYRESKISYININFLRHA
VEFHGSKESIIKCQEAVRELTDKIQSRTVDRQKVDDSGQCPICFDVLETK
SHQLEICSHSYCIECFSGMCQHAIKNKDLPLSCAHEDCDEKISIHDMTAY
LDAKDIVPVAIERFVADNPKKYKYCITPDCINVYRVSEFADPEDAFHCLM
CQVQICTYCHKEYHAGLTCRFESRRKDDNLREWLAEDKQKRGLCPGCSAP
IERFDGCMHIQCLSCRKHVCWRCKTAVFASSNECYDHMSRCGAGGFH Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004386 | helicase activity |
| GO:0003676 | nucleic acid binding |
| GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0004386 |
helicase activity |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 66..86 |
| None | No IPR available | COILS | Coil | Coil | coord: 35..55 |
| None | No IPR available | COILS | Coil | Coil | coord: 1229..1249 |
| None | No IPR available | GENE3D | 2.20.25.20 | | coord: 1493..1538
e-value: 1.4E-6
score: 28.0
coord: 1424..1471
e-value: 5.9E-4
score: 19.6 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 301..474
e-value: 4.6E-50
score: 169.0 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 124..282
e-value: 9.6E-30
score: 103.0 |
| None | No IPR available | GENE3D | 3.30.70.330 | | coord: 857..939
e-value: 0.0092
score: 15.6 |
| None | No IPR available | CDD | cd00079 | HELICc | coord: 326..460
e-value: 5.52969E-16
score: 76.1224 |
| None | No IPR available | CDD | cd00590 | RRM_SF | coord: 863..916
e-value: 0.0028218
score: 36.5141 |
| None | No IPR available | CDD | cd00046 | DEXDc | coord: 143..279
e-value: 3.03253E-23
score: 97.4079 |
| None | No IPR available | SUPERFAMILY | 57850 | RING/U-box | coord: 1338..1400 |
| None | No IPR available | SUPERFAMILY | 57850 | RING/U-box | coord: 1480..1527 |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain | SMART | SM00487 | ultradead3 | coord: 103..310
e-value: 6.2E-18
score: 75.6 |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain | PROSITE | PS51192 | HELICASE_ATP_BIND_1 | coord: 135..297
score: 18.922 |
| IPR007502 | Helicase-associated domain | SMART | SM00847 | ha2_5 | coord: 513..605
e-value: 1.1E-8
score: 44.8 |
| IPR007502 | Helicase-associated domain | PFAM | PF04408 | HA2 | coord: 514..601
e-value: 7.3E-7
score: 29.4 |
| IPR001650 | Helicase, C-terminal | SMART | SM00490 | helicmild6 | coord: 349..453
e-value: 9.2E-22
score: 88.3 |
| IPR001650 | Helicase, C-terminal | PFAM | PF00271 | Helicase_C | coord: 327..452
e-value: 3.6E-17
score: 62.6 |
| IPR001650 | Helicase, C-terminal | PROSITE | PS51194 | HELICASE_CTER | coord: 321..495
score: 18.605 |
| IPR002867 | IBR domain | SMART | SM00647 | ibrneu5 | coord: 1404..1469
e-value: 0.018
score: 21.1
coord: 1473..1534
e-value: 0.098
score: 13.0 |
| IPR002867 | IBR domain | PFAM | PF01485 | IBR | coord: 1412..1469
e-value: 4.2E-8
score: 33.2 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 1319..1408
e-value: 8.0E-6
score: 24.7 |
| IPR011545 | DEAD/DEAH box helicase domain | PFAM | PF00270 | DEAD | coord: 143..280
e-value: 8.2E-7
score: 28.9 |
| IPR001841 | Zinc finger, RING-type | CDD | cd00162 | RING | coord: 1339..1372
e-value: 0.00693496
score: 35.4992 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 120..627 |
| IPR000504 | RNA recognition motif domain | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 861..920 |
Blast
BLAST of TCONS_00006285-protein vs. Swiss-Prot (Human)
Match: DHX8 (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1) HSP 1 Score: 397.512 bits (1020), Expect = 1.534e-116 Identity = 251/633 (39.65%), Postives = 359/633 (56.71%), Query Frame = 0
Query: 124 SLPIYAKKNEIIETVDKWPVTILTAETGSGKSTQVVQYLQQSH--PDATIVCTQPRKVAAMSLANRVSEELETDVGDLVGYCVGARADCGPGTRIVYMTDHMLLNECLNDPNLSKYEYVIVDEAHERSISTDLLLAMIKKAIVKRRGNLKLVISSATIDPTIFSDYFLGFSKRLHVSGRTYPVEALYEKVTIGMNYLQVSVTKAKELHKNEDLDGDVLVFLTTPAEIERAQELMNADPIMSAGVQC-----LVLHGRLQPEDQQLVFKPTRKGKRKIVFATNSAETSITIPNIKYVIDSGMVKEKHYDREKNASLLTVRPVNKSSAEQRMGRAGRTQPGKCYRLYIEEEYR-EMQDEMLPEILRENLGLAMLKLYEFDIGDPFKYDFVQAPPEQALMLAKQELKDLGAIKG-NRLTNYGKMMAKLDIEPKLGKFVSLCIEEGYGYDAMVIAAVCSIGGSVFFRVGTEDVKQLSDRLKTRFCDIDGDLYTYLEVYKQWSEAPETQKNSWCVANSMNAKSLRFTRDLINDMVKNVKPLGHAILKRFHDLEEV---KEIVPKYLTQCFPASLAYYSGHPRGGYYITGYEPERFYMHPSAALSFLNRYPKWILFTEILTTSRTYL--INTIDIPEWL 742
SLPIY K ++++ V + I+ ETGSGK+TQ+ QYL ++ I CTQPR+VAAMS+A RVSEE +G VGY + P T I YMTD MLL ECL DP+L++Y +++DEAHER+I TD+L ++KK + KR+ ++KL+++SAT+D FS YF + + GRTYPVE LY K +YL S+ ++H E GD+LVFLT EI+ A E++ + + S G L ++ L E Q +F P G RK+V ATN AETS+TI I YV+D G VK+K Y+ + L V P++++ A+QR GRAGRT PGKCYRLY E YR EM +PEI R NL +L L I D +DF+ APP + L+ A ++L LGA+ LT G+ MA+ +EP L K + + + G + + I ++ S+ +VF+R +D + L+D+ K +F +GD T L VY W N WC N + A+SLR +D+ M+ I+ R H L+ V K V C P+ GY T + + Y+HPS+AL NR P+W+++ E++ T++ Y+ + TID P WL
Sbjct: 564 SLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQ-DMKLIVTSATLDAVKFSQYFYE-APIFTIPGRTYPVEILYTKEP-ETDYLDASLITVMQIHLTEP-PGDILVFLTGQEEIDTACEIL-YERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSV-QNVFYR--PKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKN--NKFSNPWCYENFIQARSLRRAQDIRKQML--------GIMDR-HKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYR-TLIDQQVVYIHPSSAL--FNRQPEWVVYHELVLTTKEYMREVTTID-PRWL 1173
The following BLAST results are available for this feature:
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