TCONS_00006271-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00006271-protein
Unique Name	TCONS_00006271-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	326

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00006271-protein ID=TCONS_00006271-protein|Name=TCONS_00006271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MYYTQTFPIILLLCNVEITQSKVSSHHKLINGYEVVYPRTKYFDNNQKVI
TQNQHQDTKHKANVNFQGLGRKFRINLKKNSNIVSSSNTHLHLLNETGNV
VGKHRVENCYYNGQLMGDDQSFVSLSLCNGVRGLINTGDSKRYYIQPIHK
RGAVNIETQPHILRQISPELSIKNFSLDHKTDLINFDDDKKKDPLLFKRS
KRSEETGEKTIETLLTLDRSMAQFYGVDAAKEYALTVANVAHNILRDSSI
GPNPINLVISKMVVMTTPLPDLTINHHAENTLQSFGRWAERRNEINQAND
DKPAYDFAVLLTKQDICKDQNQPCES

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003581	XLOC_003581	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00006271	TCONS_00006271	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002870	Peptidase_M12B_N
IPR024079	MetalloPept_cat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0008237	metallopeptidase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008237	metallopeptidase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002870	Peptidase M12B, propeptide	PFAM	PF01562	Pep_M12B_propep	coord: 52..163 e-value: 3.2E-21 score: 76.0
IPR024079	Metallopeptidase, catalytic domain	GENE3D	3.40.390.10		coord: 205..325 e-value: 8.3E-23 score: 80.7
None	No IPR available	SUPERFAMILY	55486	Metalloproteases ("zincins"), catalytic domain	coord: 208..318

Blast

[Close]

BLAST of TCONS_00006271-protein vs. Swiss-Prot (Human)
Match: ATS17 (A disintegrin and metalloproteinase with thrombospondin motifs 17 OS=Homo sapiens GN=ADAMTS17 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.594e-28
Identity = 79/286 (27.62%), Postives = 141/286 (49.30%), Query Frame = 0

Query:   64 VNFQGLGRKFRINLKKNSNIVSSSNTHLHLLNETGNVVGKHR-VENCYYNGQLMGDDQSFVSLSLC---NGVRGLINTGDSKRYYIQPIHKRGAVNIETQPHILRQ---ISPELSIKNFSLDHKTDLINFDDDKKKDPLLFKRSKRSEE-------TGEKTIETLLTLDRSMAQFYGVDAAKEYALTVANVAHNILRDSSIGPNPINLVISKMVVMTTPLPDLTINHHAENTLQSFGRWAERR---------NEINQANDDKPAYDFAVLLTKQDICKDQNQPCES 326
            ++    GR   + L+++   +S        + E G    + R  E C+Y+G+++G   S VSLS C    G+ GLI  G  ++  IQP++         + H++R+   ++P  S +    +    ++     +KK P   + S+   E       T E T+ETL+  D  M Q++G +AA+ + LTV N+ +N+ +  S+G   IN+ ++K+V++      L+I HH E +L+SF  W             N++    DD P  D AV +T+ D C  +++PC++
Sbjct:   83 LHLPAFGRDLYLQLRRDLRFLSRGFE----VEEAGAARRRGRPAELCFYSGRVLGHPGSLVSLSACGAAGGLVGLIQLG-QEQVLIQPLNNSQG-PFSGREHLIRRKWSLTPSPSAEAQRPEQLCKVLT----EKKKPTWGRPSRDWRERRNAIRLTSEHTVETLVVADADMVQYHGAEAAQRFILTVMNMVYNMFQHQSLGIK-INIQVTKLVLLRQRPAKLSIGHHGERSLESFCHWQNEEYGGARYLGNNQVPGGKDDPPLVDAAVFVTRTDFCVHKDEPCDT 357

The following BLAST results are available for this feature:

BLAST of TCONS_00006271-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00006271-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ATS17	1.594e-28	27.62	A disintegrin and metalloproteinase with thrombosp...	[more]

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TCONS_00006271-protein (polypeptide) - C. hemisphaerica