TCONS_00006215-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006215-protein
Unique NameTCONS_00006215-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length958

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006215-protein ID=TCONS_00006215-protein|Name=TCONS_00006215-protein|organism=Clytia hemisphaerica|type=polypeptide|length=958bp
SVYIYKYIVAVKIKELNLNNIQFFVNSWKNTCVAGNIITPLCHAHSGNFK
SFSVHGKAGFVTTKTQTSLCHYHFESVLWYQLKMEELKRVLQGTVSPDQN
ELQAALKYLEDAATHNFPQFVDCLSSLLSNASEPSEVRQAAGIQLKNCLV
AKSASLKQGYHERWFNLEEQIRNKVKAQVLQSLGTETTKPSSAASCVSGI
ASAELPLNLWPELMQQLCEVASAPGSSETLKEASLEAIGYICQDLDHQFL
TQHSAAILRTIMTGLAKEQPNNNIKFAAANAFLNSLEFIRGNFEKQDDRN
FMMTVLCNATVCPEKRIKVASLQCCVKIMSLYYEYMGPYMQSLFNITVDA
MKSDDEDVVLQGVEFWSSVCDEEIDLAIEAADATEMSQEIKSFSQYYAKN
ALQHIVPIVVEILTRQEEHDDEEDWTPHKAAGVCLMLLASCCGNDIVDHV
LPFVKENIQKTDWKLRDASVMAFGSILEGPDPEKISAPVKEGIGLLIALM
EDPNMTVRDSVAWTLTRICEQIPEAALNTNHIENFLNALIKNLDSEPRVA
NNVCWAFSALADAAYDSAQCGDDESEPKTYILSSKFPFIISKIIATGDRG
DAHLSNLRSSAYEAVMDLVKNSPKDVYEAIGQTFEAILGKMVTILKMEEQ
GNQVGDYSQHNDFKSLLCATLQATLRKLTPEDVMKASKQCMEALLRMLTV
SKVGGVQEDAFMAVGTMVECLGNNFMGYLEAFKPFLIQGLQNRAEYSVCI
SAIGVVGDLCRAVGAEITPYCDEIMQSCLENLADNSVHRSVKPHVLSTFG
DIALAIGKNFSKYAEIVLTTLVQASGAQVDKSDYDLVDYLNELREHCLEA
YTGIIQGLKGEDDKNINPEVQIVTPQLFAIFQFIEVISQDPDRTDALVGA
CCGLLGDICTAFELPQNLKDALSSSVISELLSEGRRSKESKTRTLSVWAS
KTIRNMRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003561XLOC_003561Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006215TCONS_00006215Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001494Importin-beta_N
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0008536Ran GTPase binding
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
molecular_function GO:0005488 binding
molecular_function GO:0008536 Ran GTPase binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001494Importin-beta, N-terminal domainSMARTSM00913IBN_N_2coord: 105..185
e-value: 2.0E-8
score: 44.0
IPR001494Importin-beta, N-terminal domainPFAMPF03810IBN_Ncoord: 107..185
e-value: 6.5E-12
score: 45.1
IPR001494Importin-beta, N-terminal domainPROSITEPS50166IMPORTIN_B_NTcoord: 105..185
score: 15.683
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 210..958
e-value: 1.8E-134
score: 449.4
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 84..185
e-value: 0.0085
score: 14.2
NoneNo IPR availablePFAMPF13513HEAT_EZcoord: 463..518
e-value: 1.8E-8
score: 34.5
NoneNo IPR availableCDDcd00020ARMcoord: 450..561
e-value: 2.96175E-9
score: 54.6279
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 85..954

Blast
[Close]
BLAST of TCONS_00006215-protein vs. Swiss-Prot (Human)
Match: IMB1 (Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2)

HSP 1 Score: 989.949 bits (2558), Expect = 0.000e+0
Identity = 482/874 (55.15%), Postives = 644/874 (73.68%), Query Frame = 0 
Query:   86 ELKRVLQGTVSPDQNELQAALKYLEDAATHNFPQFVDCLSSLLSNASEPSEVRQAAGIQLKNCLVAKSASLKQGYHERWFNLEEQIRNKVKAQVLQSLGTETTKPSSAASCVSGIASAELPLNLWPELMQQLCEVASAPGSSETLKEASLEAIGYICQDLDHQFLTQHSAAILRTIMTGLAKEQPNNNIKFAAANAFLNSLEFIRGNFEKQDDRNFMMTVLCNATVCPEKRIKVASLQCCVKIMSLYYEYMGPYM-QSLFNITVDAMKSDDEDVVLQGVEFWSSVCDEEIDLAIEAADATEMSQEIKSFSQYYAKNALQHIVPIVVEILTRQEEHDDEEDWTPHKAAGVCLMLLASCCGNDIVDHVLPFVKENIQKTDWKLRDASVMAFGSILEGPDPEKISAPVKEGIGLLIALMEDPNMTVRDSVAWTLTRICEQIPEAALNTNHIENFLNALIKNLDSEPRVANNVCWAFSALADAAYDSAQCGDDESEPKTYILSSKFPFIISKIIATGDRGDAHLSNLRSSAYEAVMDLVKNSPKDVYEAIGQTFEAILGKMVTILKMEEQGNQVGDYSQHNDFKSLLCATLQATLRKLTPEDVMKASKQCMEALLRML-TVSKVGGVQEDAFMAVGTMVECLGNNFMGYLEAFKPFLIQGLQNRAEYSVCISAIGVVGDLCRAVGAEITPYCDEIMQSCLENLADNSVHRSVKPHVLSTFGDIALAIGKNFSKYAEIVLTTLVQASGAQVDKSDYDLVDYLNELREHCLEAYTGIIQGLKGEDDKNINPEVQIVTPQLFAIFQFIEVISQDPDRTDALVGACCGLLGDICTAFELPQNLKDALSSSVISELLSEGRRSKESKTRTLSVWASKTIRNMR 957
            EL  +L+ TVSPD+ EL+AA K+LE AA  N P F+  LS +L+N       R AAG+Q+KN L +K   +K  Y +RW  ++   R +VK  VLQ+LGTET +PSSA+ CV+GIA AE+P+N WPEL+ QL    + P S+E +KE++LEAIGYICQD+D + L   S  IL  I+ G+ KE+P+NN+K AA NA LNSLEF + NF+K+ +R+F+M V+C AT CP+ R++VA+LQ  VKIMSLYY+YM  YM  +LF IT++AMKSD ++V LQG+EFWS+VCDEE+DLAIEA++A E  +  +  S++YAK ALQ++VPI+ + LT+Q+E+DD++DW P KAAGVCLMLLA+CC +DIV HVLPF+KE+I+  DW+ RDA+VMAFG ILEGP+P ++   V + +  LI LM+DP++ VRD+ AWT+ RICE +PEAA+N  ++   L  LI+ L +EPRVA+NVCWAFS+LA+AAY++A   DD+ EP TY LSS F  I+ K++ T DR D H +NLRSSAYE++M++VKNS KD Y A+ +T   I+ ++  +L+ME       D  Q ND +SLLCATLQ  LRK+  +D ++ S   M +LLRM  + +  GGVQEDA MAV T+VE LG  F+ Y+EAFKPFL  GL+N AEY VC++A+G+VGDLCRA+ + I P+CDE+MQ  LENL + +VHRSVKP +LS FGDIALAIG  F KY E+VL TL QAS AQVDKSDYD+VDYLNELRE CLEAYTGI+QGLKG D +N++P+V +V P++  I  FI+ I+ D D TD +V    GL+GD+CTAF     LK   +  +I ELL+EGRRSK +K +TL+ WA+K +R ++
Sbjct:    2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKG-DQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFG-KDVLKLVEARPMIHELLTEGRRSKTNKAKTLATWATKELRKLK 873
The following BLAST results are available for this feature:
BLAST of TCONS_00006215-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IMB10.000e+055.15Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 P... [more]
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