TCONS_00006156-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006156-protein
Unique NameTCONS_00006156-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1047

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006156-protein ID=TCONS_00006156-protein|Name=TCONS_00006156-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1047bp
MSSSEDEDFSPGEEEEGKDNGSGESSEEVEDEEDDFEEEEEYEQSAGRKN
KKKRKQAPAHGGYIIDEADVDDDYEDEEDEGESGFVDKSLVNDEASNHAE
DMSRARSLHNLFGNDTSAEEIADYYKRKYADSEREYEGDYSGDYEAPAEI
EQQSLLPDVKDPNLWMVRCRMGEEKQVVFMLMRKYISLSSGETPLQIKSA
IAVEGLKGYIYVEAFKQSHVKQAIEGFGALRIGIWTQQMVPINEMPDVLK
VVKDLVQIKAKSWVRIKRGIYKDDIAQVDYVNTARNQVTLKIIPRIDYSM
MRGDMRSLSDEAEKRKRKRRPPQKLFDRDAIKNIGGDLSMDGDFYLFEYN
RYRQGFLYKTMVMSAIMSEGVKPSLSELEKFETSIDDAELELGRERGREE
ASHSFAAGDMVRVSEGELINLKGKVMTIDGNTILILPKHEDLKDPLEFPA
HELEKYFKEGDHVKVIKGKYEGDTGLIVRVEENVIVLFSDLTFHELKVKP
DDLQLCSEMSTGVDSLGQHQWGDLVSLDPQTVGVIVRLERETFSVLNQHG
KVVQVKPQAVSKRKGRTAIALDSEQNQIQVRDIVKVIDGQFEGKQGEIKH
LYRGNAFIQSKTVLENGGIFVVKSRSLQLAGGGKNASNVMSGVGGTGYMS
PRISSPARDGPGGGGGGGTPNRSPRGGGGGGGRGRGRGGGRDQTIIGQTV
RIAQGPFKGYIGIIKDATDSLARVELHTNCKTISVDRSRLALVSGQNKGG
GVTAYGHTPMYGNAQTPMYGNQTPMYGSRTPMYGNQTPMHDGNRTPSYGG
NRTPSHDPSRTPSHDASRTPSHDPSRTPSHSGHGGAWDPTQPNTPARPSD
EFENYFDPGPSPGFGTTPSPATPSHGGYNAPFTPGTPMSNVFGGDSGYSP
IHTPSPMHGNPLTPGAGLGPLSPAYTPQTPMGHYEDDNEPAQQLTIDIEV
KVQNDYTEQRYANKMCVIRSLSGDSATVQLDGENVTIRTSALEVMPPVKH
DKIKFLGGNRVGEIGTLVNIDGPDGVIKVSDGIDMLQMSLLAKHVPA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003511XLOC_003511Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006156TCONS_00006156Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005824KOW
IPR024945Spt5_C_dom
IPR006645NGN_dom
IPR014722Rib_L2_dom2
IPR022581Spt5_N
IPR005100TF_Spt5_NGN-domain
IPR017071TF_Spt5
IPR008991Translation_prot_SH3-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0032784regulation of DNA-templated transcription, elongation
GO:0006357regulation of transcription from RNA polymerase II promoter
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032784 regulation of DNA-templated transcription, elongation
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 378..398
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 771..936
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 647..697
NoneNo IPR availableCDDcd09888NGN_Eukcoord: 163..250
e-value: 5.0722E-40
score: 143.055
NoneNo IPR availableCDDcd06082KOW_Spt5_2coord: 405..455
e-value: 1.18955E-20
score: 86.4018
NoneNo IPR availableCDDcd06083KOW_Spt5_3coord: 456..506
e-value: 5.95922E-24
score: 96.0552
NoneNo IPR availableCDDcd06081KOW_Spt5_1coord: 261..298
e-value: 1.36652E-18
score: 80.2054
NoneNo IPR availableCDDcd06084KOW_Spt5_4coord: 581..623
e-value: 4.5705E-17
score: 76.0193
NoneNo IPR availableCDDcd06085KOW_Spt5_5coord: 695..742
e-value: 2.56907E-24
score: 97.1701
IPR005824KOWSMARTSM00739kow_9coord: 257..284
e-value: 8.8
score: 15.1
coord: 996..1023
e-value: 100.0
score: 6.4
coord: 577..604
e-value: 0.0091
score: 25.2
coord: 404..431
e-value: 0.2
score: 20.7
coord: 693..720
e-value: 0.36
score: 19.9
coord: 456..483
e-value: 2.6E-6
score: 37.0
IPR005824KOWPFAMPF00467KOWcoord: 459..486
e-value: 6.5E-7
score: 29.0
IPR024945Spt5 C-terminal domainSMARTSM01104CTD_2coord: 777..906
e-value: 5.7E-8
score: 42.5
IPR006645NusG, N-terminalSMARTSM00738nusgn_4coord: 161..252
e-value: 2.8E-13
score: 60.1
IPR006645NusG, N-terminalGENE3D3.30.70.940coord: 159..257
e-value: 5.1E-35
score: 119.0
IPR014722Ribosomal protein L2 domain 2GENE3D2.30.30.30coord: 258..327
e-value: 0.082
score: 13.0
IPR014722Ribosomal protein L2 domain 2GENE3D2.30.30.30coord: 695..733
e-value: 0.14
score: 11.8
coord: 399..436
e-value: 0.11
score: 12.1
coord: 452..503
e-value: 1.6E-6
score: 27.6
coord: 573..612
e-value: 0.0038
score: 16.8
IPR022581Spt5 transcription elongation factor, N-terminalPFAMPF11942Spt5_Ncoord: 63..157
e-value: 6.8E-13
score: 49.4
IPR005100Transcription elongation factor Spt5, NGN domainPFAMPF03439Spt5-NGNcoord: 163..249
e-value: 1.7E-26
score: 91.8
IPR017071Transcription elongation factor Spt5PIRSFPIRSF036945Spt5coord: 1..1047
e-value: 0.0
score: 1033.0
IPR008991Translation protein SH3-like domainSUPERFAMILY50104Translation proteins SH3-like domaincoord: 447..507

Blast
[Close]
BLAST of TCONS_00006156-protein vs. Swiss-Prot (Human)
Match: SPT5H (Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1)

HSP 1 Score: 929.858 bits (2402), Expect = 0.000e+0
Identity = 536/1067 (50.23%), Postives = 683/1067 (64.01%), Query Frame = 0 
Query:   56 QAPAHGGYIIDEAD--------------VDDDYEDEEDEGESGFVDKSLVNDEASNHAEDMSRARSLHNLFGNDTSAEEIADYYKRKYADSEREYEGDYSGDYEAPAEIEQQSLLPDVKDPNLWMVRCRMGEEKQVVFMLMRKYISLSSGETPLQIKSAIAVEGLKGYIYVEAFKQSHVKQAIEGFGALRIGIWTQQMVPINEMPDVLKVVKDLVQIKAKSWVRIKRGIYKDDIAQVDYVNTARNQVTLKIIPRIDYSMMRGDMRSLSDEAEKRKRKRRPPQKLFDRDAIKNIGGDLSMDGDFYLFEYNRY-RQGFLYKTMVMSAIMSEGVKPSLSELEKFETSIDDAELELGRERGREEASHSFAAGDMVRVSEGELINLKGKVMTIDGNTILILPKHEDLKDPLEFPAHELEKYFKEGDHVKVIKGKYEGDTGLIVRVEENVIVLFSDLTFHELKVKPDDLQLCSEMSTGVDSLGQHQWGDLVSLDPQTVGVIVRLERETFSVLNQHGKVVQVKPQAVSKRK-GRTAIALDSEQNQIQVRDIVKVIDGQFEGKQGEIKHLYRGNAFIQSKTVLENGGIFVVKSRSLQLAGGGKNASNVMSGVGGTGYMSPRISSPARDGPGGGGGGGTPNRSPRGGGGGGGRGRGRGGGRDQTIIGQTVRIAQGPFKGYIGIIKDATDSLARVELHTNCKTISVDRSRLALVSGQNKGGGVTAYGHTPMYGNAQTPMYGNQTPMYGSRTPMYGNQTPMHDGNRTPSYGGNRTPSHDPSRTPSHDASRTPSHDPSRTPSHSGHGGAWDPTQPNTPARPSDEFENYFD--PGPSP-GFGTTPSPATPSHGG---------YNAPFTPGTP-MSN---------------------------VFGGDSGYSPIH-------TPSPM--HGNPLTPGAGLGPLSPA------YTPQTPMGHYEDDNEPAQQLTIDIEVKVQNDYTEQRYANKMCVIRSLSGDSATVQL-DGENV-TIRTSALEVMPPVKHDKIKFLGGNRVGEIGTLVNIDGPDGVIK--VSDGIDMLQMSLLAKHVPA 1047
            + P HGG+I+DEAD               +D  E EE E  +  +D  +++       ED S AR L NL+  D   EE+ +YY +KYA S    E  Y G  E   +I QQ LLP VKDPNLW V+C++GEE+     LMRK+I+    +TPLQIKS +A E +KGYIYVEA+KQ+HVKQAIEG G LR+G W QQMVPI EM DVLKVVK++  +K KSWVR+KRGIYKDDIAQVDYV  ++N ++LK+IPRIDY  ++  M SL D   KRK+ +RPPQ+LFD + I+++GGD++ DGDF +FE NRY R+GFL+K+  MSA+++EGVKP+LSELEKFE   +  +LE+  E   +E  H+F  GD V V EGELINL+GK++++DGN I I+PKHEDLKD LEFPA EL KYFK GDHVKVI G++EGDTGLIVRVEEN ++LFSDLT HELKV P DLQLCSE ++GVD  GQH+WG+LV LDPQTVGVIVRLERETF VLN +GKVV V+ QAV+++K  R A+ALDSEQN I V+DIVKVIDG   G++GEI+HL+R  AF+  K ++ENGG+FV K+R L LAGG K        VGG   MSPRISSP     GG  GG            G G      G RD  +IGQTVRI+QGP+KGYIG++KDAT+S ARVELH+ C+TISVDR RL  V  +  GG  + YG TPMYG +QTPMYG+     GSRTPMYG+QTP+ DG+RTP YG                 S+TP HD SRTP+ SG   AWDP  PNTP+R  +E+E  FD  P PSP  +G TP+P TP +           YN P TPGTP M N                           V    +GY   H       TPSPM    +P     G  P++P       Y P TP    E ++  +  +T DI+VKV++ Y + +   +  VIRS++G   +V L D E V +I +  LE + P K++K+K + G      G L++IDG DG+++  + + + +L +  L K + A
Sbjct:   68 KKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASN--IDNVVLD-------EDRSGARRLQNLW-RDQREEELGEYYMKKYAKSSVG-ETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARM-SLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPSAGGQRGGFGSPGG------GSGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYG-SQTPMYGS-----GSRTPMYGSQTPLQDGSRTPHYG-----------------SQTPLHDGSRTPAQSG---AWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYN-PQTPGTPAMYNTDQFSPYAAPSPQGSYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHTPGSGIEQNS--SDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSEKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKLLEA 1087
The following BLAST results are available for this feature:
BLAST of TCONS_00006156-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPT5H0.000e+050.23Transcription elongation factor SPT5 OS=Homo sapie... [more]
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