TCONS_00006025-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006025-protein
Unique NameTCONS_00006025-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length398

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006025-protein ID=TCONS_00006025-protein|Name=TCONS_00006025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp
MLLRSESMNFLEQTHERIHLVGRRLISKDFKSLSFDARSLEVPPIIEDVI
KNNSHQGGGGDSSTGENSSPETPTEPEHYKNETQKEKKKKKRKKDRQPTV
TMSPPADAQVPVFFADDIRHRDGGQNKKNHDKISSKNSGLSTPKIEKSSS
FKRKTKPPYLESMMAREYNSDQNSKSPSRPDSRNNNNNTKNDTEYNIVLL
GDFGVGKTALAVRFVTRRYLHEYDPTLERTYEKQIQCSNGSAKVKLWDTV
NKSFDAYTEYADGFIVMYSTTSSQTSQNAQNTIKTIRASKYAAVRSVPIL
LLGTKCELEHARKVHAKEQEAFAKAHGCLWREISVACTINIDGTIKGLIE
EIIITDNGRIDSNGHSKLTATTSLSRKPSAAKKHLMKSLLSSKKKEKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003439XLOC_003439Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006025TCONS_00006025Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR020849Small_GTPase_Ras
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 295..308
score: 40.12
coord: 235..257
score: 17.44
coord: 218..234
score: 21.82
coord: 195..216
score: 43.4
coord: 330..352
score: 20.21
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 192..355
e-value: 2.3E-15
score: 67.0
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 197..332
e-value: 0.0049
score: -77.9
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 195..355
e-value: 3.6E-11
score: 29.8
NoneNo IPR availableGENE3D3.40.50.300coord: 187..396
e-value: 5.9E-27
score: 93.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 373..398
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..192
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 197..352
e-value: 1.8E-28
score: 99.1
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 193..346
e-value: 7.6E-17
score: 59.5
IPR020849Small GTPase superfamily, Ras typePROSITEPS51421RAScoord: 190..390
score: 15.448
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 190..354

Blast
[Close]
BLAST of TCONS_00006025-protein vs. Swiss-Prot (Human)
Match: RIT2 (GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.439e-24
Identity = 54/164 (32.93%), Postives = 91/164 (55.49%), Query Frame = 0 
Query:  194 EYNIVLLGDFGVGKTALAVRFVTRRYLHEYDPTLERTYEKQIQCSNGSAKVKLWDTVNKS-FDA----YTEYADGFIVMYSTTSSQTSQNAQNTIKTIRASKYAAVRSVPILLLGTKCELEHARKVHAKEQEAFAKAHGCLWREISVACTINIDGTIKGLIEEI 352
            EY +V+LG  GVGK+A+ ++F++ ++   +DPT+E  Y+ Q++  N  A + + DT  ++ F A    Y    +GFI+ YS T  Q+ Q A    + I   ++     +P++L+G K +LE  R+V  +E  + A+ + C + E S A    ID    GL+ EI
Sbjct:   20 EYKVVMLGAGGVGKSAMTMQFISHQFPDYHDPTIEDAYKTQVRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRH--TYEIPLVLVGNKIDLEQFRQVSTEEGLSLAQEYNCGFFETSAALRFCIDDAFHGLVREI 181
The following BLAST results are available for this feature:
BLAST of TCONS_00006025-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RIT22.439e-2432.93GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 P... [more]
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