TCONS_00006020-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006020-protein
Unique NameTCONS_00006020-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length417

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006020-protein ID=TCONS_00006020-protein|Name=TCONS_00006020-protein|organism=Clytia hemisphaerica|type=polypeptide|length=417bp
MIHSLFLINNTGDIFLEKHWKSVVPRTICDYFFEAQRKTTDPHDIPPVIA
TPHHYLIQIYRNEVYFVSVAQSEVPPLFVIEFLHKVFDTFVDYFNDCNEQ
IIMDQIVVVYELLEEMLDNGFPLATESNILKELIKPPNIINKVVNTVTGK
TNMSSELPTGSLSNVPWRRAGVKYANNEIYFDLIEEIDCIIDKQGQLINI
EIQGQIESYCRLSGMPDLCLSFINPRLLEDVSFHPCVRLKRWENEKVLSF
MPPDGSYKLLSYHLSGGMIQLPIYVKPQISFISGSSGRFDLTIGQKANLG
KTIEQCVATIQMPQQVLHCNLTPSVGNQSFDPVKKILRWDIGKIQAQKTL
PTLRGNISLVTGAPPPEDMPIITMQFRIGQFAISGIKVNRLDVYGERYKP
FKGVKYVTKAGKFQVRT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003436XLOC_003436Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006020TCONS_00006020Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001392Clathrin_mu
IPR028565MHD
IPR022775AP_mu_sigma_su
IPR018240Clathrin_mu_CS
IPR011012Longin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0030131clathrin adaptor complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006810 transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030131 clathrin adaptor complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001392Clathrin adaptor, mu subunitPRINTSPR00314CLATHRINADPTcoord: 99..126
score: 48.38
coord: 228..255
score: 58.44
coord: 12..32
score: 17.32
IPR001392Clathrin adaptor, mu subunitPIRSFPIRSF005992AP_complex_mucoord: 1..417
e-value: 6.5E-113
score: 376.1
IPR028565Mu homology domainPFAMPF00928Adap_comp_subcoord: 165..416
e-value: 7.8E-71
score: 238.4
IPR028565Mu homology domainPROSITEPS51072MHDcoord: 176..416
score: 39.299
IPR028565Mu homology domainSUPERFAMILY49447Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptorcoord: 165..416
NoneNo IPR availableGENE3D2.60.40.1170coord: 299..412
e-value: 9.6E-15
score: 54.0
coord: 158..298
e-value: 8.8E-48
score: 161.3
NoneNo IPR availableGENE3D3.30.450.60coord: 1..142
e-value: 6.8E-33
score: 112.9
NoneNo IPR availableCDDcd09252AP-3_Mu3_Ctermcoord: 165..416
e-value: 4.52222E-126
score: 366.526
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 1..128
e-value: 3.4E-7
score: 30.2
IPR018240Clathrin adaptor, mu subunit, conserved sitePROSITEPS00990CLAT_ADAPTOR_M_1coord: 165..185
IPR011012Longin-like domainSUPERFAMILY64356SNARE-likecoord: 1..142

Blast
[Close]
BLAST of TCONS_00006020-protein vs. Swiss-Prot (Human)
Match: AP3M1 (AP-3 complex subunit mu-1 OS=Homo sapiens GN=AP3M1 PE=1 SV=1)

HSP 1 Score: 602.438 bits (1552), Expect = 0.000e+0
Identity = 281/419 (67.06%), Postives = 347/419 (82.82%), Query Frame = 0 
Query:    1 MIHSLFLINNTGDIFLEKHWKSVVPRTICDYFFEAQRKTTDPHDIPPVIATPHHYLIQIYRNEVYFVSVAQSEVPPLFVIEFLHKVFDTFVDYFNDCNEQIIMDQIVVVYELLEEMLDNGFPLATESNILKELIKPPNIINKVVNTVTGKTNMSSELPTGSLSNVPWRRAGVKYANNEIYFDLIEEIDCIIDKQGQLINIEIQGQIESYCRLSGMPDLCLSFINPRLLEDVSFHPCVRLKRWENEKVLSFMPPDGSYKLLSYHLSG-GMIQLPIYVKPQISFISGSS-GRFDLTIGQKANLGKTIEQCVATIQMPQQVLHCNLTPSVGNQSFDPVKKILRWDIGKIQAQKTLPTLRGNISLVTGAPPPEDMPIITMQFRIGQFAISGIKVNRLDVYGERYKPFKGVKYVTKAGKFQVRT 417
            MIHSLFLIN +GDIFLEKHWKSVV +++CDYFFEAQ K  D  ++PPVI+TPHHYLI IYR++++FVSV Q+EVPPLFVIEFLH+V DTF DYF +C+E  I D +V+VYELLEEMLDNGFPLATESNILKELIKPP I+  VVN++TG +N+   LPTG LSN+PWRRAGVKY NNE YFD++EEID IIDK G  +  EIQG I++  +LSGMPDL LSF+NPRLL+DVSFHPC+R KRWE+E+VLSF+PPDG+++L+SY +S   ++ +P+YVK  ISF   SS GRFD+TIG K N+GKTIE    T+ MP+ VL+ NLTP+ G+ +FDPV K+L WD+GKI  QK LP+L+G ++L +GAP PE+ P + +QF+I Q AISG+KVNRLD+YGE+YKPFKGVKYVTKAGKFQVRT
Sbjct:    1 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRLLDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQNMGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQK-LPSLKGLVNLQSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT 418
The following BLAST results are available for this feature:
BLAST of TCONS_00006020-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AP3M10.000e+067.06AP-3 complex subunit mu-1 OS=Homo sapiens GN=AP3M1... [more]
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