TCONS_00005994-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00005994-protein
Unique Name	TCONS_00005994-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	482

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00005994-protein ID=TCONS_00005994-protein|Name=TCONS_00005994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=482bp
FLDSKMAPNNETSTASCGKCGPGYATPLEATKGPREKLLYFPCIPADATK
RNYLCTVDADPESKDYATVIHRTYIEAGNGDEIHHSGWNACSSCHGDPNR
QRNLLVLPSITSASVFFFDVATDPRKPTLKHVINNDEMLESAKIQNLHTA
HCLGNGNIMISGMGNVDGDGKGGFALVDGKTLKVTGTWEKEGQAAPMGYD
FWYQPRHNVMVSSEWGSPKAFLTGFNPAHVEQGMYGNNLHIWKWNEKEYV
KKIDLGPNGLIPLELRFLHHPDESEGYVGCALSSTLFRIYKDEAEEWQAE
QVAQVEPLDVEGWVLPTMPGLITDILISLDDRFLYLSNWLHGDVRQYDIT
DRRKPKLVGQVWIGGSISKGSGVKVLKEGYEQPEPTILNGKKVEGATQMI
QLSLDGKRLYVTTSLFSAWDKQFYPDLAKHGSFLLQVDVDNEKGGMKINE
KFAIDFATEPEGPAFAHEVRYPGGDCSSDIWV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003424	XLOC_003424	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00005994	TCONS_00005994	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008826	Se-bd
IPR011042	6-blade_b-propeller_TolB-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0008430	selenium binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008430	selenium binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 482..482
None	No IPR available	SUPERFAMILY	75011	3-carboxy-cis,cis-mucoante lactonizing enzyme	coord: 94..367 coord: 397..414
IPR008826	Selenium-binding protein	PFAM	PF05694	SBP56	coord: 19..482 e-value: 6.7E-196 score: 651.4
IPR011042	Six-bladed beta-propeller, TolB-like	GENE3D	2.120.10.30		coord: 85..422 e-value: 4.1E-12 score: 45.4

Blast

[Close]

BLAST of TCONS_00005994-protein vs. Swiss-Prot (Human)
Match: SBP1 (Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2)

HSP 1 Score: 604.749 bits (1558), Expect = 0.000e+0
Identity = 279/473 (58.99%), Postives = 354/473 (74.84%), Query Frame = 0

Query:   14 TASCGKCGPGYATPLEATKGPREKLLYFPCIPADATKR--NYLCTVDADPESKDYATVIHRTYIEAGNGDEIHHSGWNACSSCHGDPNRQRNLLVLPSITSASVFFFDVATDPRKPTLKHVINNDEMLESAKIQNLHTAHCLGNGNIMISGMGNVDGDGKGGFALVDGKTLKVTGTWEKEGQAAPMGYDFWYQPRHNVMVSSEWGSPKAFLTGFNPAHVEQGMYGNNLHIWKWNEKEYVKKIDLGPNGLIPLELRFLHHPDESEGYVGCALSSTLFRIYKDEAEEWQAEQVAQVEPLDVEGWVLPTMPGLITDILISLDDRFLYLSNWLHGDVRQYDITDRRKPKLVGQVWIGGSISKGSGVKVL--KEGYEQPEPTILNGKKVEGATQMIQLSLDGKRLYVTTSLFSAWDKQFYPDLAKHGSFLLQVDVDNEKGGMKINEKFAIDFATEPEGPAFAHEVRYPGGDCSSDIWV 482
               CG CGPGY+TPLEA KGPRE+++Y PCI  +      +YL TVD DP+S  Y  VIHR  +     DE+HHSGWN CSSC GD  + R  LVLPS+ S+ ++  DV ++PR P L  VI   ++    ++  LHT+HCL +G +MIS +G+V G+GKGGF L+DG+T +V GTWE+ G AAP+GYDFWYQPRHNVM+S+EW +P     GFNPA VE G+YG++L++W W   E V+ + L  +GLIPLE+RFLH+PD ++G+VGCALSST+ R YK+E   W  E+V QV P  V+GW+LP MPGLITDIL+SLDDRFLY SNWLHGD+RQYDI+D ++P+L GQ+++GGSI KG  V+VL  +E   QPEP ++ GK+V G  QMIQLSLDGKRLY+TTSL+SAWDKQFYPDL + GS +LQVDVD  KGG+K+N  F +DF  EP GPA AHE+RYPGGDCSSDIW+
Sbjct:    2 ATKCGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPM-PNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVEAGLYGSHLYVWDWQRHEIVQTLSLK-DGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKGWLLPEMPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472

The following BLAST results are available for this feature:

BLAST of TCONS_00005994-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00005994-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SBP1	0.000e+0	58.99	Selenium-binding protein 1 OS=Homo sapiens GN=SELE...	[more]

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TCONS_00005994-protein (polypeptide) - C. hemisphaerica