TCONS_00005971-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00005971-protein
Unique Name	TCONS_00005971-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	247

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00005971-protein ID=TCONS_00005971-protein|Name=TCONS_00005971-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
LDLNNLPPITKVYDESLEIPSGIITKDELDSAIDQMKIGKAPGLDGLPPE
FWKMKNVRHILLKFCIETFLGDRPDEWGISTLIPIPKKGDLTKPDNYRGI
ALSQIASKVYNRIILNRIRPVVDKLLRPNQNGFREGRSTSAHVLALRRIV
EELKNHKKEAVISFIDFCKAFDSINRDRMFQILQAYGIPETVVNAIKVMY
RNTSATVTTPEGQTDPFVISTGVLQGDPLAPFLFIIVLDYALQSSIT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003404	XLOC_003404	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00005971	TCONS_00005971	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.270		coord: 123..246 e-value: 2.0E-16 score: 59.7
None	No IPR available	CDD	cd01650	RT_nLTR_like	coord: 80..243 e-value: 3.09961E-42 score: 143.971
None	No IPR available	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 58..240
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 85..244 e-value: 2.4E-35 score: 122.0
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 66..247 score: 11.684

Blast

[Close]

BLAST of TCONS_00005971-protein vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.577e-26
Identity = 80/246 (32.52%), Postives = 127/246 (51.63%), Query Frame = 0

Query:    1 LDLNNLPPITKVYDESLEIPSGIITKDELDSAIDQMKIGKAPGLDGLPPEFWKMKNVRHILLKFCIETFL-----GDRPDEWGISTLIPIPKKG-DLTKPDNYRGIALSQIASKVYNRIILNRIRPVVDKLLRPNQNGFREGRSTSAHVLALRRIVEELKNHK-KEAVISFIDFCKAFDSINRDRMFQILQAYGIPETVVNAIKVMYRNTSATVTTPEGQTDPFVISTGVLQGDPLAPFLFIIVLD 239
            LD   LP + +   ESL  P   IT  E+ + I+ +   K+PG DG   EF++    +  L+ F ++ F      G  P+ +  +++I IPK G D TK +N+R I+L  I +K+ N+I+ NRI+  + KL+  +Q GF  G     ++     +++ +   K K  VI  ID  KAFD I +  M + L   GI    +  I+ +Y   +A +     + + F + TG  QG PL+P LF IVL+
Sbjct:  433 LDTYTLPRLNQEEVESLNRP---ITGSEIVAIINSLPTKKSPGPDGFTAEFYQ--RYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLE 673

The following BLAST results are available for this feature:

BLAST of TCONS_00005971-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00005971-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LORF2	2.577e-26	32.52	LINE-1 retrotransposable element ORF2 protein OS=H...	[more]

You are here

TCONS_00005971-protein (polypeptide) - C. hemisphaerica