TCONS_00005756-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005756-protein
Unique NameTCONS_00005756-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1101

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005756-protein ID=TCONS_00005756-protein|Name=TCONS_00005756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1101bp
MSSKRKGIESNSSGKKFKAEKDDFSQSTFEEDLALMEAISEESQSQKTDS
QRTDSQDSQLGTLIRNPAEMNNRWTRPALPEIDTTKDAIIFQQTEVDFYT
GKPLPGMPGLSTGPSPIVRFYGVTMEGNSVLCHVHGFLPYFYVLAPKNFK
IEHCETFRSDLNKVVLSDMRSNKDNITTAVVAVELENKESIYGYHRNTKL
PYLRITVALQKLIAPSRRLLERGFECTGYPNKCYNTYESNIDFEVRFMVD
TNTVGCNWIELPPNAYNIRNFSSNPSKISRCQLEVDIAYDKFISHQPEGE
WDKIAPVRILSFDIECAGRKGIFPEAEKDPIIQIANMVIRQGDKDPFIRN
IFTLDTCAPIVGSDVHSYKKEADLLQAWSDFVNQVDADIITGYNIVNFDL
PYLLNRATTLKIKRFPFLGRILNEKSTISTTTFQSRAYGKRENKVINIAG
TVQFDLLHALLRDYKLRSYTLNSVSYHFLKEQKEDVQHSIITDLQNGNSQ
TRRRLAVYCMKDAILPLRLLEKLMCIINYMEMARVTGVPLSYLLSRGQQI
KVVSQLLRKTKLQDLILPAQKIEAGDEYEGATVIDPIKGYYKMPIATLDF
ASLYPSIMMAHNLCYTSLLTREAAKEMGQDEYIITPCGHYFVKSNLRKGL
LPEILEHLLSARKKAKADLKKETDPFKKKVLDGRQLALKISANSVYGFTG
AQVGKLPCLEISSSVTAFGRQMIERTKQLVEDKYNIKNGFKYDSKVIYGD
TDSVMVRFGTDSLEESMSLGQEAAAYVSGHFVKPIKLEFEKVYFPYLLIS
KKRYAGLYYTRTETYDKMDCKGIETVRRDNAPLVAKLINTCLQKLLIDKD
PDGAILYTKQVISDLLCNRIDISELVITKELTKTEDEYGAKQAHSVLAEK
MKKRDAGSAPKLGDRVPYVIVAGVKGSKAYEKAEDPIYVLENNIPIDTNH
YLEHQLMNPLLRIFEPILGENKTQNALFKGEHTRVKTVVTAKVGGLAKFT
KKTATCLGCKTVIPKELGNSAVCKHCKPKESALFQKEISSLASLEEKFNK
LWTQCQRCQGSFHEDVLCTSRDCSIFYMRKKAQKDLTQQDELISRFGSFS
W
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003267XLOC_003267Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005756TCONS_00005756Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006172DNA-dir_DNA_pol_B
IPR006133DNA-dir_DNA_pol_B_exonuc
IPR006134DNA-dir_DNA_pol_B_multi_dom
IPR025687Znf-C4pol
IPR023211DNA_pol_palm_dom
IPR012337RNaseH-like_dom
IPR017964DNA-dir_DNA_pol_B_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0003887DNA-directed DNA polymerase activity
GO:00084083'-5' exonuclease activity
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006172DNA-directed DNA polymerase, family BPRINTSPR00106DNAPOLBcoord: 595..608
score: 58.69
coord: 746..754
score: 76.12
coord: 685..697
score: 58.32
IPR006172DNA-directed DNA polymerase, family BSMARTSM00486polmehr3coord: 305..760
e-value: 4.4E-164
score: 561.1
IPR006133DNA-directed DNA polymerase, family B, exonuclease domainPFAMPF03104DNA_pol_B_exo1coord: 124..474
e-value: 1.3E-82
score: 277.6
IPR006134DNA-directed DNA polymerase, family B, multifunctional domainPFAMPF00136DNA_pol_Bcoord: 532..967
e-value: 3.0E-149
score: 497.6
IPR025687C4-type zinc-finger of DNA polymerase deltaPFAMPF14260zf-C4polcoord: 1006..1079
e-value: 1.5E-18
score: 66.8
IPR023211DNA polymerase, palm domainGENE3D3.90.1600.10coord: 581..825
e-value: 7.3E-81
score: 270.8
NoneNo IPR availableTIGRFAMTIGR00592TIGR00592coord: 577..965
e-value: 1.3E-82
score: 276.4
NoneNo IPR availableGENE3D3.30.342.10coord: 109..278
e-value: 1.6E-39
score: 134.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61
NoneNo IPR availableCDDcd05777DNA_polB_delta_exocoord: 301..530
e-value: 2.19104E-154
score: 460.12
NoneNo IPR availableCDDcd05533POLBc_deltacoord: 576..968
e-value: 0.0
score: 814.193
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 564..971
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 303..546
e-value: 3.9E-74
score: 248.6
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 112..544
IPR017964DNA-directed DNA polymerase, family B, conserved sitePROSITEPS00116DNA_POLYMERASE_Bcoord: 748..756

Blast
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BLAST of TCONS_00005756-protein vs. Swiss-Prot (Human)
Match: DPOD1 (DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1 PE=1 SV=2)

HSP 1 Score: 1403.27 bits (3631), Expect = 0.000e+0
Identity = 654/1076 (60.78%), Postives = 833/1076 (77.42%), Query Frame = 0 
Query:   27 STFEEDLALMEAISEESQSQKTDSQRTDSQDSQLGTLIRNPAEMNNRWTRPALPEIDTTKDAIIFQQTEVDFYTG--KPLPGMPGLSTGPSPIVRFYGVTMEGNSVLCHVHGFLPYFYVLAPKNFKIEHCETFRSDLNKVVLSDMRSNKDNITTAVVAVELENKESIYGYHRNTKLPYLRITVALQKLIAPSRRLLERGFECTGYPNKCYNTYESNIDFEVRFMVDTNTVGCNWIELPPNAYNIRNFSSNPSKISRCQLEVDIAYDKFISHQPEGEWDKIAPVRILSFDIECAGRKGIFPEAEKDPIIQIANMVIRQGDKDPFIRNIFTLDTCAPIVGSDVHSYKKEADLLQAWSDFVNQVDADIITGYNIVNFDLPYLLNRATTLKIKRFPFLGRILNEKSTISTTTFQSRAYGKRENKVINIAGTVQFDLLHALLRDYKLRSYTLNSVSYHFLKEQKEDVQHSIITDLQNGNSQTRRRLAVYCMKDAILPLRLLEKLMCIINYMEMARVTGVPLSYLLSRGQQIKVVSQLLRKTKLQDLILPAQKIEAGDEYEGATVIDPIKGYYKMPIATLDFASLYPSIMMAHNLCYTSLLTREAAKEMG--QDEYIITPCGHYFVKSNLRKGLLPEILEHLLSARKKAKADLKKETDPFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISSSVTAFGRQMIERTKQLVEDKYNIKNGFKYDSKVIYGDTDSVMVRFGTDSLEESMSLGQEAAAYVSGHFVKPIKLEFEKVYFPYLLISKKRYAGLYY-TRTETYDKMDCKGIETVRRDNAPLVAKLINTCLQKLLIDKDPDGAILYTKQVISDLLCNRIDISELVITKELTKTEDEYGAKQAHSVLAEKMKKRDAGSAPKLGDRVPYVIVAGVKGSKAYEKAEDPIYVLENNIPIDTNHYLEHQLMNPLLRIFEPILGENKTQNALFKGEHTRVKTVVTAKVGGLAKFTKKTATCLGCKTVIPKELGNSAVCKHCKPKESALFQKEISSLASLEEKFNKLWTQCQRCQGSFHEDVLCTSRDCSIFYMRKKAQKDLTQQDELISRFG 1097
            S FEEDLALME +  E + Q+ + +   S    +      P+ ++ RW RP  P +D   + +IFQQ E+D Y G  +P+PG P  S G  P++R +GVT EG SV CH+HGF PYFY  AP  F  EH    + +LN  +  D R  ++    AV+AVEL ++ES++GYH +   P+LRITVAL +L+AP+RRLLE+G    G     +  YE+N+DFE+RFMVDT+ VGCNW+ELP   Y +R       K ++CQLE D+ +   +SH PEG W +IAP+R+LSFDIECAGRKGIFPE E+DP+IQI ++ +R G+ +PF+R   TL  CAPI+G+ V SY+KE DLLQAWS F+  +D D+ITGYNI NFDLPYL++RA TLK++ FPFLGR+    S I  ++FQS+  G+R+ KV+++ G VQ D+L  LLR+YKLRSYTLN+VS+HFL EQKEDVQHSIITDLQNGN QTRRRLAVYC+KDA LPLRLLE+LM ++N +EMARVTGVPLSYLLSRGQQ+KVVSQLLR+   + L++P  K E G++Y GATVI+P+KGYY +PIATLDF+SLYPSIMMAHNLCYT+LL    A+++G  +D++I TP G  FVK+++RKGLLP+ILE+LLSARK+AKA+L KETDP +++VLDGRQLALK+SANSVYGFTGAQVGKLPCLEIS SVT FGRQMIE+TKQLVE KY ++NG+   +KV+YGDTDSVM RFG  S+ E+M+LG+EAA +VSGHF  PI+LEFEKVYFPYLLISKKRYAGL + +R + +D+MDCKG+E VRRDN PLVA L+   L++LLID+DP+GA+ + + VISDLLCNRIDIS+LVITKELT+   +Y  KQAH  LAE+M+KRD GSAP LGDRVPYVI++  KG  AY K+EDP++VLE+++PIDT +YLE QL  PLLRIFEPILGE + +  L +G+HTR KTV+T KVGGL  F K+   C+GC+TV+  +    AVC+ C+P+ES L+QKE+S L +LEE+F++LWTQCQRCQGS HEDV+CTSRDC IFYMRKK +KDL  Q++L+ RFG
Sbjct:   32 SQFEEDLALMEEMEAEHRLQEQEEEELQSVLEGVADGQVPPSAIDPRWLRPTPPALDPQTEPLIFQQLEIDHYVGPAQPVPGGPPPSRGSVPVLRAFGVTDEGFSVCCHIHGFAPYFYTPAPPGFGPEHMGDLQRELNLAISRDSRGGRELTGPAVLAVELCSRESMFGYHGHGPSPFLRITVALPRLVAPARRLLEQGIRVAGLGTPSFAPYEANVDFEIRFMVDTDIVGCNWLELPAGKYALRL----KEKATQCQLEADVLWSDVVSHPPEGPWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAPILGAKVQSYEKEEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKVQTFPFLGRVAGLCSNIRDSSFQSKQTGRRDTKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSIITDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAMHEGLLMPVVKSEGGEDYTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGTAQKLGLTEDQFIRTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQDVISDLLCNRIDISQLVITKELTRAASDYAGKQAHVELAERMRKRDPGSAPSLGDRVPYVIISAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLTGKVGGLLAFAKRRNCCIGCRTVLSHQ---GAVCEFCQPRESELYQKEVSHLNALEERFSRLWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVRKDLEDQEQLLRRFG 1100
The following BLAST results are available for this feature:
BLAST of TCONS_00005756-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOD10.000e+060.78DNA polymerase delta catalytic subunit OS=Homo sap... [more]
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