TCONS_00005473-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005473-protein
Unique NameTCONS_00005473-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length657

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005473-protein ID=TCONS_00005473-protein|Name=TCONS_00005473-protein|organism=Clytia hemisphaerica|type=polypeptide|length=657bp
MLDFFTIFSKGGIVLWYFQGTVGDFTNPVNELIKSVVLQERSGSGSFNHN
QLAIKYKLDNEFELVFVVGYQNILQLSYIDKFLSDIQLQFRDRYKNRLIL
NDFYGEFDFNETFTNILMENEHSSRVQKREMKTFETSNKANKIRMQRGTL
ELSNTSKKDDKKSKSKDDGAGTPKSPKGKTAPKSPTPKESPSPARPSSPV
TEQPQTNGEVVNGTMELTEDQIIEQKRALLMKGMLRKKKPAKPDSKNASP
RSDKKKGKTDRRWNGGNVDAATLDYSSAGNSSASMTNGESDLVTEKEKLM
VGQMEGDLKSIDVGDDVEDIGYENEDEKKNNSSANSGGSVFSFFKGLAGQ
KAITPEAIAPVLEKMKEHLISKNVAADIASKLCNSVSAKLEGKVLGTFTG
VASAVRSSMQESLVQILSPKKRVDILRDVMEAKRKGKPYTIVFCGVNGVG
KSTNLAKICFWLMENNHRVMIAACDTFRSGAVEQLRTHQCRLKALHPKGE
KEPEKVMLYDKGYGKDAAAVSMEAINLARDLNFDVVLVDTAGRMQDNEPL
MRSLAKLIKINEPDLVLFVGEALVGNDGVDQLRKFNQALADHSDVNNPHL
IDGIVLTKFDTIDDKVGASISMTYETGQPIVFVGTGQTYTDLRNLNVNAV
VKALLKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003108XLOC_003108Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005473TCONS_00005473Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000897SRP54_GTPase_dom
IPR003593AAA+_ATPase
IPR013822Signal_recog_particl_SRP54_hlx
IPR007222Sig_recog_particle_rcpt_asu_N
IPR027417P-loop_NTPase
IPR011012Longin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
GO:0006886intracellular protein transport
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005047signal recognition particle binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005785signal recognition particle receptor complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
biological_process GO:0006810 transport
cellular_component GO:0005785 signal recognition particle receptor complex
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005047 signal recognition particle binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainSMARTSM00962SRP54_3coord: 438..656
e-value: 1.1E-79
score: 280.8
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainPFAMPF00448SRP54coord: 439..655
e-value: 2.6E-47
score: 160.9
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainPROSITEPS00300SRP54coord: 629..642
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 437..589
e-value: 7.8E-7
score: 38.7
IPR013822Signal recognition particle, SRP54 subunit, helical bundleSMARTSM00963SRP54_N_2coord: 332..417
e-value: 1.0E-7
score: 41.6
IPR013822Signal recognition particle, SRP54 subunit, helical bundlePFAMPF02881SRP54_Ncoord: 338..407
e-value: 1.4E-8
score: 34.7
IPR013822Signal recognition particle, SRP54 subunit, helical bundleSUPERFAMILY47364Domain of the SRP/SRP receptor G-proteinscoord: 336..419
NoneNo IPR availableGENE3D3.30.450.60coord: 1..132
e-value: 3.9E-40
score: 136.3
NoneNo IPR availableGENE3D3.40.50.300coord: 437..558
e-value: 1.6E-11
score: 44.0
NoneNo IPR availableGENE3D1.20.120.140coord: 133..421
e-value: 1.1E-20
score: 73.5
NoneNo IPR availableGENE3D1.20.120.140coord: 559..657
e-value: 1.0E-22
score: 79.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 235..289
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..217
NoneNo IPR availableCDDcd03115SRPcoord: 439..634
e-value: 1.8676E-72
score: 232.434
IPR007222Signal recognition particle receptor, alpha subunit, N-terminalPFAMPF04086SRP-alpha_Ncoord: 27..314
e-value: 8.3E-53
score: 180.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 435..656
IPR011012Longin-like domainSUPERFAMILY64356SNARE-likecoord: 1..124

Blast
[Close]
BLAST of TCONS_00005473-protein vs. Swiss-Prot (Human)
Match: SRPRA (Signal recognition particle receptor subunit alpha OS=Homo sapiens GN=SRPRA PE=1 SV=2)

HSP 1 Score: 626.32 bits (1614), Expect = 0.000e+0
Identity = 345/672 (51.34%), Postives = 442/672 (65.77%), Query Frame = 0 
Query:    1 MLDFFTIFSKGGIVLWYFQGTVGDFTNPVNELIKSVVLQERSGSGSFNHNQLAIKYKLDNEFELVFVVGYQNILQLSYIDKFLSDIQLQFRDRYKNRL----ILNDFYGEFDFNETFTNILMENEHSSRVQK-REMKTFETSNKANKIRMQRGTLELSNTSKKDDKKSKSKDDGAGTPKSPKGKTAPKSPTPKE-SPSPARPSSPVTEQPQTNGEVVNGTMELTEDQIIEQKRALLMKGMLRKKKPAKPDSKNASPRSDKKKGKTDRRWN-GGNVDAATLDYSSAGNSSASMTNGESDL-VTEKEKLMVGQMEG-DLKSIDVGDDVEDIGYENEDEKKNNSSANSGGSVFSFFKGLAGQKAITPEAIAPVLEKMKEHLISKNVAADIASKLCNSVSAKLEGKVLGTFTGVASAVRSSMQESLVQILSPKKRVDILRDVMEAKRKGKPYTIVFCGVNGVGKSTNLAKICFWLMENNHRVMIAACDTFRSGAVEQLRTHQCRLKALHPKGEKEPEK------VMLYDKGYGKDAAAVSMEAINLARDLNFDVVLVDTAGRMQDNEPLMRSLAKLIKINEPDLVLFVGEALVGNDGVDQLRKFNQALADHSDVNNPHLIDGIVLTKFDTIDDKVGASISMTYETGQPIVFVGTGQTYTDLRNLNVNAVVKALLKS 657
            MLDFFTIFSKGG+VLW FQG     T PVN LI+SV+LQER G+ SF H  L +KYKLDN+FELVFVVG+Q IL L+Y+DK + D+   FRD+Y+  +     L+   G FDF   F  +L E E SS+++    MK FE S KA K    R  +E     +K  +K+K+        +   G  A   P P E S  P  P + V               EL+++++I +KR   ++   R  + +   +K+ +P+   KK    R W  GG  +   LDYS+        TNG  +  ++E   L+ G   G  L+ +D     ++   +N    K +++  + G +F   KGL G K+++ E +  VL+KM++HLI+KNVAADIA +LC SV+ KLEGKV+GTF+ V S V+ ++QESLVQIL P++RVD+LRD+M+A+R+ +PY + FCGVNGVGKSTNLAKI FWL+EN   V+IAACDTFR+GAVEQLRTH  RL ALHP     PEK      V L++KGYGKDAA ++MEAI  AR+  FDVVLVDTAGRMQDN PLM +LAKLI +N PDLVLFVGEALVGN+ VDQL KFN+ALADHS    P LIDGIVLTKFDTIDDKVGA+ISMTY T +PIVFVGTGQTY DLR+LN  AVV AL+K+
Sbjct:    1 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESSKIRAPTTMKKFEDSEKAKK--PVRSMIE--TRGEKPKEKAKNSKKKGAKKEGSDGPLATSKPVPAEKSGLPVGPENGV---------------ELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPKEKGKKAP--RVWELGGCANKEVLDYST------PTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSSDDEGAAQNS--TKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHP-----PEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMKA 638
The following BLAST results are available for this feature:
BLAST of TCONS_00005473-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRPRA0.000e+051.34Signal recognition particle receptor subunit alpha... [more]
back to top