TCONS_00005345-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00005345-protein
Unique Name	TCONS_00005345-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	760

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00005345-protein ID=TCONS_00005345-protein|Name=TCONS_00005345-protein|organism=Clytia hemisphaerica|type=polypeptide|length=760bp
FQVKEEQQDEEDLEEVEKEEAEEAEIEKMAGDDGLISADEVPVIRPSDGE
LARARKARLRDNMTWFVIKDIGTYFLFIMIVSKLAYAEKDPHQYLFRQDL
LNAFQNAKYSGGPKFEDVSNIGYFYAWMRDTLIPTVFQGPWYNDEDMEYT
GYMDNKQNFLVSIPRIRQVRVHKDSCIVPDEFSGYINHCEMAYTTSAEEE
RDYDIEWKTLNMSNWQSTNSRKRRSIFARTSRLISHGEEAPLTPRYRKRR
NTDTSSNVGSYQQIATGRKSSLRRRKQKKTTLTGSPIYYVSPDALLPDGS
VISCLDRWEHFTPSELRGFPVLGKLVTYGGGGYVANIGYNEETGWTVTAD
LHAHNWLDKQTRAAFVEFTVYNANVNLFATAFLYIETLPTGGAFPWADFQ
VFNGYRYSAANGLQTLWAELVFICFIIYFSVREIRKLIKQKGEYFKSFFN
LIELLLMPLYIMMFVLIIARWLTTSANIKTFTENPKDFVSFQYTTAADSA
LQGVIGIVCFLLNIKFLRMFQFAKTFWTVGVIMKGFAYPLGIFMIPFTMY
FLLFAFVANLGFGAHSEHYQSFVRTICTQFLHLLGATDFEHISDVSPIFG
PMYYTAYTVYMLFIVFNVFLAIICEAIDGDYEEEFVKQAGDIQVIEYMTR
KFKDIIGIEDEDARQIEADGEDLPEEKLNETNEKMLEFEETIAKLELYVN
DLHMVDAMKDDASEDVEYEPDHKPANQHSPRDEESNDGSLQLTSQSAVSG
SNMNLSTIQL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003038	XLOC_003038	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00005345	TCONS_00005345	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013122	PKD1_2_channel

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 678..698
None	No IPR available	COILS	Coil	Coil	coord: 3..27
None	No IPR available	GENE3D	1.20.120.350		coord: 597..742 e-value: 0.0098 score: 14.6 coord: 1..529 e-value: 8.4E-6 score: 24.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 238..279
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 714..760
IPR013122	Polycystin cation channel, PKD1/PKD2	PFAM	PF08016	PKD_channel	coord: 114..215 e-value: 5.5E-17 score: 61.5 coord: 308..626 e-value: 3.5E-67 score: 226.9

Blast

[Close]

BLAST of TCONS_00005345-protein vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4)

HSP 1 Score: 162.925 bits (411), Expect = 4.440e-41
Identity = 111/415 (26.75%), Postives = 198/415 (47.71%), Query Frame = 0

Query:  252 TDTSSNVGSYQQIATGR--KSSLRRRKQKKTTLTGSPIYYVSPDALLPD---GSVISCLDRWEHFTPSELRGFPVLGKLVTYGGGGYVANIGYNEETGWTVTADLHAHNWLDKQTRAAFVEFTVYNANVNLFATAFLYIETLPTGGAFPWADFQVFNGYRYSAANGLQTLWAELVFICFIIYFSVREIRKLIKQKGEYFKSFFNLIELLLMPLYIMMFVLIIARWLTTSANIKTFTENPKDFVSFQYTTAADSALQGVIGIVCFLLNIKFLRMFQFAKTFWTVGVIMKGFAYPLGIFMIPFTMYFLLFAFVANLGFGAHSEHYQSFVRTICTQFLHLLGATDFEHISDVSPIFGPMYYTAYTVYMLFIVFNVFLAIICEAIDGDYEEEFVKQAGDIQVIEYMTRKFKDIIGIEDE 661
            TD +S +    QI   R  +SS    +Q +  L G    Y      + D   G   + L  W++ +  + +G+P+ GKL  Y GGGYV  +G + +    +   L  + WLD  TRA FVE TVYNANVNLF    L +ET   G  F  A  Q    Y ++       + AEL++  F++Y+ V + +++ K+   YF S +NL+EL ++        + + R +    +++    + ++ +SF  T AAD+AL  +I  +  L  +K   + +       +   ++     +  FMI      L ++  +NL FG     Y++      T     LG  ++E + D SP+ G     +  V+M F+V N+F+++I  A     E+++ + + + ++++ +  K    +GI+ +
Sbjct: 2018 TDGNSKLVGSAQIRQVRVQESSCPLAQQPQAYLNGCRAPYSLDAEDMADYGEGWNATTLSEWQYQSQDQRQGYPIWGKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTLTLETSALGTFFTHAALQSLRLYPFTDGWHPFVVAAELIYFLFLLYYMVVQGKRMSKETWGYFCSKWNLLELAIILASWSALAVFVKRAVLAERDLQRCRNHREEGISFSETAAADAALGYIIAFLVLLSTVKLWHLLRLNPKMNMITAALRRAWGDISGFMIVILTMLLAYSIASNLIFGWKLRSYKTLFDAAETMVSLQLGIFNYEEVLDYSPVLGSFLIGSCIVFMTFVVLNLFISVILVAF--SEEQKYYQLSEEGEIVDLLLMKILSFLGIKSK 2430

The following BLAST results are available for this feature:

BLAST of TCONS_00005345-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00005345-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PK1L2	4.440e-41	26.75	Polycystic kidney disease protein 1-like 2 OS=Homo...	[more]

You are here

TCONS_00005345-protein (polypeptide) - C. hemisphaerica