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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00005280-protein ID=TCONS_00005280-protein|Name=TCONS_00005280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1547bp
MVEEKTEISDNKINPTKIDVKDDSVDVNELKQRLKRKSDIGIGNEIKKPK
VDNGEQPVLSEEIFEWPLYLASTGSAGVKKELFQHIVPECMCGFESGMKL
EVPNKDYKNTYWLATIIAKATPLILVRYEGFKESNNADFWCNTLTDDIHP
VGWCARTKHALKPPKAIQDQETNWYAYLIKNLTGTRKASESLFLKKSHPV
HYLRAGHYVEVIDLYNPTCYWLARIVEIFAGRLSLQYEGYEDKQAEFWCY
YLDERLRPVGHGLKNALTLYPPKVTPTISHGQFKRITEKLITLSRRSDNA
VFKSLFQGWKQKEEHNLRLGMKLEAINPQNPSEICVATVTRIFDPFYFLV
KIDNLISVQEDVTTDSFVARKGQAGIFPVGYCFKNGVHLQQPKGFNGKFT
WDGYLKYTKTEAVSDSFFPELKAPEDFMEGMKLEAVDPDHNSNICVATIR
RVVGGHLWLHIDGDTRGEMIYAYNSFNIFPVGWCEETGHELQWPRPETLE
QKNRISSLRHTATRRNRLEDLRKGKVTTVETRDPKKDVAPNQKVKANKNV
YRKGRRGVSRKQGTYNEESSEGTVDTSIAFVCINRLAEEFNTEKSIKEFY
NLDAQNRLPAQIVTIDDDDDNDDGSPKKNDATTTYSEQDLNYLSLVRVKP
NKLSKTESEMFDKNLNEHSAEDVEDDLTSQGRGKGRSLNSVISMLTATRN
QPRPSHLLEQYKQSKNKNKQTTQSKENINVIDLSNDDAPSAVKTNIVESA
PDGSINIPGKGQYKIMEQIVTKQGDRNKIILRLGKPVKTNQPVVEKRNKS
KTTVNSNAVSPSRDITSPRTSVDDMYTLENMVHTHQGLDEMLRNRFKKVH
TFCAKLPRNPLMWTRKHVSTFINNANFAKYASNFSEQEIDGHALMLLTVQ
EIHHMLGVKLGPAMKIHDLIYSLQQLVNEAYLANEGGGFDDEERFTLPKT
EHKSTKHKNRDFTFTSDNYQPTETDSIENEKDSLHEISHSDATTTEENES
LFESRPSENGNDEVIENVSSIQPNDVEISKKIDEQIEKMEVKSTNSVKDE
HENEVEKSPLKQETKISNTDIIDNTPGESKQSNAKVSSWMDQNNDALEKV
RMETCGDFEKEYYGLVNQTYGSNTNPYLVRGPPIQTPGHKHPVRFIQIRP
LAGSNPNMIYPPMAGAYPRFIQPPPTSAESPQQMPFILKFGSVKDLEGGT
HPSATSEKIDTKSKKTKNSKSEDRKGSERRKRKSDVTAAPRSPKHIRPGA
LAIIPKYPDNSKEIYDKHLGNVEIELINKKLWDDFFNTGTEMILTRNGRR
MFPALGVKFTGMLTSSKYVILLDFIPADQFRYKFEYKPNAPKWMVACEEG
TPKPTQVYIHPFSPQFGFEWCRTDVSFIKCKLTNNYRENCGHILMQSMHK
YQPRINVLYWDGTLPFQITPHEMMRLCVKKSFMFEQTQFIAVTAYQNNEV
TNLKIQSNPFARGFRGDWRKTKAKRTNQKKDTSTGFSYEDENEEEDYGGS
DDEQSQSMVGEQSQSMTNSMSFDDKENDNDDAMHFNDTTIVKVEPEY Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0005515 | protein binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001699 | Transcription factor, T-box | PRINTS | PR00937 | TBOX | coord: 1437..1450
score: 72.83
coord: 1289..1313
score: 55.65
coord: 1375..1384
score: 71.96
coord: 1358..1371
score: 51.24
coord: 1394..1408
score: 49.28
coord: 1458..1466
score: 71.5 |
| IPR001699 | Transcription factor, T-box | SMART | SM00425 | tbox5 | coord: 1271..1471
e-value: 4.2E-73
score: 258.9 |
| IPR001699 | Transcription factor, T-box | PFAM | PF00907 | T-box | coord: 1274..1465
e-value: 1.0E-60
score: 205.1 |
| IPR001699 | Transcription factor, T-box | GENE3D | 2.60.40.820 | | coord: 1269..1472
e-value: 7.0E-66
score: 221.1 |
| IPR001699 | Transcription factor, T-box | PROSITE | PS50252 | TBOX_3 | coord: 1276..1466
score: 60.146 |
| IPR004092 | Mbt repeat | SMART | SM00561 | l3mbt_4 | coord: 287..392
e-value: 3.0E-11
score: 53.4
coord: 399..494
e-value: 5.7E-33
score: 125.5
coord: 172..272
e-value: 2.8E-18
score: 76.7
coord: 64..164
e-value: 2.1E-20
score: 83.8 |
| IPR004092 | Mbt repeat | PFAM | PF02820 | MBT | coord: 98..167
e-value: 1.4E-18
score: 66.9
coord: 431..495
e-value: 1.6E-21
score: 76.3
coord: 321..395
e-value: 2.4E-19
score: 69.3
coord: 209..273
e-value: 2.2E-13
score: 50.3 |
| IPR004092 | Mbt repeat | PROSITE | PS51079 | MBT | coord: 172..272
score: 22.585 |
| IPR004092 | Mbt repeat | PROSITE | PS51079 | MBT | coord: 287..392
score: 18.975 |
| IPR004092 | Mbt repeat | PROSITE | PS51079 | MBT | coord: 399..494
score: 26.446 |
| IPR004092 | Mbt repeat | PROSITE | PS51079 | MBT | coord: 64..164
score: 28.736 |
| IPR001660 | Sterile alpha motif domain | SMART | SM00454 | SAM_4 | coord: 860..926
e-value: 9.1E-7
score: 38.5 |
| IPR001660 | Sterile alpha motif domain | PFAM | PF00536 | SAM_1 | coord: 862..920
e-value: 2.5E-10
score: 40.5 |
| IPR001660 | Sterile alpha motif domain | PROSITE | PS50105 | SAM_DOMAIN | coord: 863..926
score: 9.891 |
| None | No IPR available | GENE3D | 2.30.30.140 | | coord: 411..531
e-value: 2.1E-27
score: 95.3
coord: 58..184
e-value: 3.1E-35
score: 120.7 |
| None | No IPR available | GENE3D | 1.10.150.50 | | coord: 848..931
e-value: 1.1E-13
score: 50.6 |
| None | No IPR available | GENE3D | 2.30.30.140 | | coord: 185..275
e-value: 1.8E-16
score: 60.0 |
| None | No IPR available | GENE3D | 2.30.30.140 | | coord: 313..410
e-value: 1.6E-22
score: 79.2 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1466..1547 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 614..636 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 798..820 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 950..1012 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1197..1243 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1041..1087 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 663..687 |
| None | No IPR available | CDD | cd09509 | SAM_Polycomb | coord: 860..920
e-value: 1.76627E-17
score: 78.29 |
| None | No IPR available | SUPERFAMILY | 63748 | Tudor/PWWP/MBT | coord: 399..495 |
| None | No IPR available | SUPERFAMILY | 63748 | Tudor/PWWP/MBT | coord: 173..273 |
| None | No IPR available | SUPERFAMILY | 63748 | Tudor/PWWP/MBT | coord: 306..420 |
| None | No IPR available | SUPERFAMILY | 63748 | Tudor/PWWP/MBT | coord: 83..187 |
| IPR018186 | Transcription factor, T-box, conserved site | PROSITE | PS01283 | TBOX_1 | coord: 1281..1300 |
| IPR013761 | Sterile alpha motif/pointed domain | SUPERFAMILY | 47769 | SAM/Pointed domain | coord: 856..928 |
| IPR008967 | p53-like transcription factor, DNA-binding | SUPERFAMILY | 49417 | p53-like transcription factors | coord: 1271..1469 |
Blast
BLAST of TCONS_00005280-protein vs. Swiss-Prot (Human)
Match: SMBT2 (Scm-like with four MBT domains protein 2 OS=Homo sapiens GN=SFMBT2 PE=1 SV=1) HSP 1 Score: 304.679 bits (779), Expect = 6.123e-87 Identity = 170/470 (36.17%), Postives = 253/470 (53.83%), Query Frame = 0
Query: 51 VDNGEQPVLSEEIFEWPLYLASTGSAGVKKELFQHIVPECMCGFESGMKLEVPNKDYKNTYWLATIIAKATPLILVRYEGFKESNNADFWCNTLTDDIHPVGWCARTKHALKPPKAIQDQETNWYAYLIKNLTGTRKASESLF---LKKSHPVHYLRAGHYVEVIDLYNPTCYWLARIVEIFAGRLSLQYEGYEDKQA-EFWCYYLDERLRPVGHGLKNALTLYPP-KVTPTISHGQFKRITEKLITLSRRSDNAVFK---SLFQGWKQKEEHNLRLGMKLEAINPQNPSEICVATVTRIFDPFYFLVKIDNLISVQEDVTTDSFVARKGQAGIFPVGYCFKNGVHLQQPKGFNGK-FTWDGYLKYTKTEAVSDSFFPELKAPEDFMEGMKLEAVDPDHNSNICVATIRRVVGGHLWLHIDG--DTRGEMIYAYNSFNIFPVGWCEETGHELQWPRPETLEQKNRISSLR 509
+D+ E L E F W YL TG++ F+H+ F+ GMKLEV NK+ +TYW+ATII L+L+RY G+ E ADFWC+ + D+HPVGWC + L PP AI+++ T+W +LI++LTG+R A +L L+ P+ + G +E+ D NP YW+ ++E GRL L+Y G ED ++ + W +YLD RLRPVG +N + PP ++ P ++K EK + D A F +F+ H +GMKLE +N P I A+VT++F+ +F V ID+L + + + S + GI PV +C KNGV L PKG++G+ F W Y K + F F + MKLEAV+P + +CVA++ V G +WLH++G E+I S +IFPVGWCE + L P ++K +I+ ++
Sbjct: 31 LDSEEGSSLEETGFNWGEYLEETGASAAPHTSFKHVEISIQSNFQPGMKLEVANKNNPDTYWVATIITTCGQLLLLRYCGYGEDRRADFWCDVVIADLHPVGWCTQNNKVLMPPDAIKEKYTDWTEFLIRDLTGSRTAPANLLEGPLRGKGPIDLITVGSLIELQDSQNPFQYWIVSVIENVGGRLRLRYVGLEDTESYDQWLFYLDYRLRPVGWCQENKYRMDPPSEIYPLKMASEWKCTLEKSLI-----DAAKFPLPMEVFKDHADLRSHFFTVGMKLETVNMCEPFYISPASVTKVFNNHFFQVTIDDL---RPEPSKLSMLCHADSLGILPVQWCLKNGVSLTPPKGYSGQDFDWADYHKQHGAQEAPPFCFRNTSFSRGFTKNMKLEAVNPRNPGELCVASVVSVKGRLMWLHLEGLQTPVPEVIVDVESMDIFPVGWCEANSYPLTAPHKTVSQKKRKIAVVQ 492
The following BLAST results are available for this feature:
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