TCONS_00005135-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00005135-protein
Unique Name	TCONS_00005135-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1320

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00005135-protein ID=TCONS_00005135-protein|Name=TCONS_00005135-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1320bp
HSSAMRKVQPSKKTKEKTKKSKDKKVKPTNTEEELTLMGTSSAHSSSTDP
QQPAPPKDDEDVEYSYKPSLSKVFFRCFGMATFIAHLYKLVHDVLLLLSP
YLLKRLINFVENEDEKEYWGYVYAAILFLLITIQSFFLQQYFTRAYTEAM
HVKTAVLGLVYRKMFKLNSFGRRNFTAGGMVNLMSVDAQKCHDLFIFLAI
TWSGPFQIIVSLVALYFLMGWSVLAGFGLLVLLIPLNMFITNREKMYHSK
QMKLKDERSKLMNEILAGIKIIKMYAWEDSFLAKVTGFRNKELKQLRNSK
LLLANTGFTISCTPFLVSIVTFAAYVYLAEEELTAEKAFVSIALFNIMRF
PLFILPILVSNIVAYKVSVKRITKFLKGEELDAEDVQRLSNDHQGPAVEV
IEGSFSWDHDKPLLREIDLSIPKGSLVAIVGQVGTGKSSLLSAILGEIHR
VGGKVKTSGKIAYVAQQPWIQNKTVRENILFNKKFKQEKYSNIIDACALK
SDLELLQMGDLTEIGEKGINLSGGQKQRVALARAIYNNADIYLMDDPLSA
VDSHVGKHIFESVIGPKGILKNKTRVLVTHNLSFLPKVDRIIVLKDHSIS
ESGSYKDLLDEGNDFAEFLKTYHQQQEEGEGGDQKKDLKRENSNEPTIFL
NKESDNLALPDVKFSKSPKKKKPTNGEDDLYFNDKRLVSASSYSIYDELD
GGTTNEETEIEQLLQEHHEIEENQEHENNAGTIIHEEKSETGTVNRSVFL
HYFKSLGIFTTIFIFLAGFGNEAALIGSRIWLAHWSSSTANMTDSKRDYF
IGIYGGIGLSQAISSLALSYGVAVGSIHASRILHTKLLVRILHCPMSFFE
TTPIGRVVNRFVKDINSVDEQIPKSFKSFITTFMSLLGTVFIISYSTPIF
LAVLLPIAILYFMTQRFYVPSSRQLKRILSVRRSPIFNHYFESINGASTI
RAFRKVDEFANENESKIDQLQAAHYPTFHCDRWLAIRLEACGNLITFFAA
LFCIVQRENLSPGIAGLSISYSLSITQSLNWLVRMASELETNIISVERIN
DYIANEVEAPSIVEDNRPPEDWPHNGSIKFDNYSVRYRHGLDLVLKDISF
DVNGSEKIGIVGRTGAGKSSVTLALFRIIESCCGKISIDGKDISQIGLKD
LRSKISIIPQDPVLFSGSIRFNIDPFNKHSDEAIWQVLEISHLKTFVSSL
ADGLHSEVVEGGDNLSVGQRQLVCLARALLRKSKILVLDEATAAVDMETD
SYIQQTIRNEFSGCTVLTIAHRLNTIIDYDRILVLDKGHIAEFDSPDNLL
KDEKTIFYGMIKDAGLVTSE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002927	XLOC_002927	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00005135	TCONS_00005135	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003593	AAA+_ATPase
IPR005292	Multidrug-R_assoc
IPR003439	ABC_transporter-like
IPR011527	ABC1_TM_dom
IPR017871	ABC_transporter_CS
IPR027417	P-loop_NTPase

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity
GO:0016887	ATPase activity
GO:0005524	ATP binding
GO:0042626	ATPase activity, coupled to transmembrane movement of substances

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 703..730
None	No IPR available	GENE3D	1.20.1560.10		coord: 732..1060 e-value: 8.0E-74 score: 247.9
None	No IPR available	GENE3D	3.40.50.300		coord: 1061..1315 e-value: 8.5E-69 score: 231.1
None	No IPR available	GENE3D	3.40.50.300		coord: 394..731 e-value: 1.0E-63 score: 215.1
None	No IPR available	GENE3D	1.20.1560.10		coord: 69..381 e-value: 1.1E-62 score: 211.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..63
None	No IPR available	CDD	cd03244	ABCC_MRP_domain2	coord: 1076..1296 e-value: 9.81449E-137 score: 418.05
None	No IPR available	CDD	cd03250	ABCC_MRP_domain1	coord: 398..598 e-value: 2.65966E-112 score: 351.386
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 423..598 e-value: 1.6E-12 score: 57.6 coord: 1104..1289 e-value: 1.8E-12 score: 57.5
IPR005292	Multi drug resistance-associated protein	TIGRFAM	TIGR00957	TIGR00957	coord: 62..1316 e-value: 0.0 score: 1553.0
IPR003439	ABC transporter-like	PFAM	PF00005	ABC_tran	coord: 414..548 e-value: 7.2E-23 score: 81.5 coord: 1095..1243 e-value: 3.0E-30 score: 105.4
IPR003439	ABC transporter-like	PROSITE	PS50893	ABC_TRANSPORTER_2	coord: 398..621 score: 22.949
IPR003439	ABC transporter-like	PROSITE	PS50893	ABC_TRANSPORTER_2	coord: 1078..1312 score: 18.101
IPR011527	ABC transporter type 1, transmembrane domain	PFAM	PF00664	ABC_membrane	coord: 83..352 e-value: 2.7E-34 score: 119.0 coord: 762..1028 e-value: 1.2E-39 score: 136.5
IPR011527	ABC transporter type 1, transmembrane domain	PROSITE	PS50929	ABC_TM1F	coord: 90..364 score: 31.801
IPR011527	ABC transporter type 1, transmembrane domain	PROSITE	PS50929	ABC_TM1F	coord: 762..1041 score: 36.726
IPR011527	ABC transporter type 1, transmembrane domain	SUPERFAMILY	90123	ABC transporter transmembrane region	coord: 70..372
IPR011527	ABC transporter type 1, transmembrane domain	SUPERFAMILY	90123	ABC transporter transmembrane region	coord: 753..1058
IPR017871	ABC transporter, conserved site	PROSITE	PS00211	ABC_TRANSPORTER_1	coord: 521..535
IPR017871	ABC transporter, conserved site	PROSITE	PS00211	ABC_TRANSPORTER_1	coord: 1215..1229
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 396..621
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1068..1308

Blast

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BLAST of TCONS_00005135-protein vs. Swiss-Prot (Human)
Match: MRP3 (Canalicular multispecific organic anion transporter 2 OS=Homo sapiens GN=ABCC3 PE=1 SV=3)

HSP 1 Score: 1212.21 bits (3135), Expect = 0.000e+0
Identity = 619/1286 (48.13%), Postives = 855/1286 (66.49%), Query Frame = 0

Query:   41 SSAHSSSTDPQQPAPPKDDEDV---EYSYKPSLSKVFFRCFGMATFIAHLYKLVHDVLLLLSPYLLKRLINFVENEDEKEYWGYVYAAILFLLITIQSFFLQQYFTRAYTEAMHVKTAVLGLVYRKMFKLNSFGRRNFTAGGMVNLMSVDAQKCHDLFIFLAITWSGPFQIIVSLVALYFLMGWSVLAGFGLLVLLIPLNMFITNREKMYHSKQMKLKDERSKLMNEILAGIKIIKMYAWEDSFLAKVTGFRNKELKQLRNSKLLLANTGFTISCTPFLVSIVTFAAYVYLAEEE-LTAEKAFVSIALFNIMRFPLFILPILVSNIVAYKVSVKRITKFLKGEELDAEDVQRLSNDHQGPAVEVIEGSFSWDHD-KPLLREIDLSIPKGSLVAIVGQVGTGKSSLLSAILGEIHRVGGKVKTSGKIAYVAQQPWIQNKTVRENILFNKKFKQEKYSNIIDACALKSDLELLQMGDLTEIGEKGINLSGGQKQRVALARAIYNNADIYLMDDPLSAVDSHVGKHIFESVIGPKGILKNKTRVLVTHNLSFLPKVDRIIVLKDHSISESGSYKDLLDEGNDFAEFLKTYHQQQEEGEGGDQKKDLKRENSNEPTIFLNKESDNLALPDVKFSKSPKKKKPTNGEDDLYFNDKRLVSASSYSIYDELDGGTTNEETEIEQLLQEH-HEIEENQEHENNA-GTIIHEEKSETGTVNRSVFLHYFKSLGIFTTIFIFLAGFGNEAALIGSRIWLAHWSSSTANMTDSKRD---YFIGIYGGIGLSQAISSLALSYGVAVGSIHASRILHTKLLVRILHCPMSFFETTPIGRVVNRFVKDINSVDEQIPKSFKSFITTFMSLLGTVFIISYSTPIFLAVLLPIAILYFMTQRFYVPSSRQLKRILSVRRSPIFNHYFESINGASTIRAFRKVDEFANENESKIDQLQAAHYPTFHCDRWLAIRLEACGNLITFFAALFCIVQRENLSPGIAGLSISYSLSITQSLNWLVRMASELETNIISVERINDYIANEVEAPSIVEDNRPPEDWPHNGSIKFDNYSVRYRHGLDLVLKDISFDVNGSEKIGIVGRTGAGKSSVTLALFRIIESCCGKISIDGKDISQIGLKDLRSKISIIPQDPVLFSGSIRFNIDPFNKHSDEAIWQVLEISHLKTFVSSLADGLHSEVVEGGDNLSVGQRQLVCLARALLRKSKILVLDEATAAVDMETDSYIQQTIRNEFSGCTVLTIAHRLNTIIDYDRILVLDKGHIAEFDSPDNLLKDEKTIFYGMIKDAGL 1316
            ++ H +S  P + A  +D+  +       KPS  K     FG +  I+  +KL+ D+L  ++P LL  LI F+ N     +WG++ A ++FL   +QS  LQ Y+   +   +  +T ++G++YRK   + +  +R  T G +VNLMSVDAQ+  DL  FL + WS P QII+++  L+  +G SVLAG   +VLLIPLN  +  + + +  KQMKLKD R KLM+EIL GIK++K+YAWE SFL +V G R  EL+ LR +  L   T FT  C+PFLV+++T   YVY+     L AEKAFVS++LFNI+R PL +LP L+SN+    VS+KRI +FL  EELD + V+R      G A+ +  G+F+W  D  P L  +D+ +PKG+LVA+VG VG GKSSL+SA+LGE+ ++ GKV   G +AYV QQ WIQN T++EN+LF K    ++Y   ++ACAL +DLE+L  GD TEIGEKGINLSGGQ+QRV+LARA+Y++ADI+L+DDPLSAVDSHV KHIF+ VIGP+G+L  KTRVLVTH +SFLP+ D IIVL D  +SE G Y  LL     FA FL  Y   +++G   D    L+     E  +  +  S++  L              T+ +   Y   K+ +         +L   +++ E +   + + H    E+ Q  E  A G +  EEK+  GTV  SVF  Y K++G+ TT+ I L   G  AA IG+ +WL+ W++    M DS+++     +G+Y  +G+ Q    +  +  +A G I A+R+LH  LL   +  P SFF+TTP GR++N F KDI  VDE +       + +F + + T+ +I  STP+F  V+LP+A+LY + QRFY  +SRQLKR+ SV RSPI++H+ E++ GAS IRA+ +  +F   +++K+D  Q + YP    +RWL+I +E  GN +  FAALF ++ R +L+PG+ GLS+SYSL +T +LNW++RM S+LE+NI++VER+ +Y   E EAP +VE +RPPE WP  G ++F NYSVRYR GLDLVL+D+S  V+G EK+GIVGRTGAGKSS+TL LFRI+E+  G+I IDG +++ IGL DLRS+++IIPQDP+LFSG++R N+DPF  +S+E IW  LE+SHL TFVSS   GL  +  EGG+NLSVGQRQLVCLARALLRKS+ILVLDEATAA+D+ETD+ IQ TIR +F  CTVLTIAHRLNTI+DY R+LVLDKG +AEFDSP NL+   + IFYGM +DAGL
Sbjct:  267 TARHKASAAPGKNASGEDEVLLGARPRPRKPSFLKALLATFGSSFLISACFKLIQDLLSFINPQLLSILIRFISNPMAPSWWGFLVAGLMFLCSMMQSLILQHYYHYIFVTGVKFRTGIMGVIYRKALVITNSVKRASTVGEIVNLMSVDAQRFMDLAPFLNLLWSAPLQIILAIYFLWQNLGPSVLAGVAFMVLLIPLNGAVAVKMRAFQVKQMKLKDSRIKLMSEILNGIKVLKLYAWEPSFLKQVEGIRQGELQLLRTAAYLHTTTTFTWMCSPFLVTLITLWVYVYVDPNNVLDAEKAFVSVSLFNILRLPLNMLPQLISNLTQASVSLKRIQQFLSQEELDPQSVER-KTISPGYAITIHSGTFTWAQDLPPTLHSLDIQVPKGALVAVVGPVGCGKSSLVSALLGEMEKLEGKVHMKGSVAYVPQQAWIQNCTLQENVLFGKALNPKRYQQTLEACALLADLEMLPGGDQTEIGEKGINLSGGQRQRVSLARAVYSDADIFLLDDPLSAVDSHVAKHIFDHVIGPEGVLAGKTRVLVTHGISFLPQTDFIIVLADGQVSEMGPYPALLQRNGSFANFLCNYAPDEDQGHLEDSWTALEGAEDKEALLIEDTLSNHTDL--------------TDNDPVTYVVQKQFMR--------QLSALSSDGEGQGRPVPRRHLGPSEKVQVTEAKADGALTQEEKAAIGTVELSVFWDYAKAVGLCTTLAICLLYVGQSAAAIGANVWLSAWTNDA--MADSRQNNTSLRLGVYAALGILQGFLVMLAAMAMAAGGIQAARVLHQALLHNKIRSPQSFFDTTPSGRILNCFSKDIYVVDEVLAPVILMLLNSFFNAISTLVVIMASTPLFTVVILPLAVLYTLVQRFYAATSRQLKRLESVSRSPIYSHFSETVTGASVIRAYNRSRDFEIISDTKVDANQRSCYPYIISNRWLSIGVEFVGNCVVLFAALFAVIGRSSLNPGLVGLSVSYSLQVTFALNWMIRMMSDLESNIVAVERVKEYSKTETEAPWVVEGSRPPEGWPPRGEVEFRNYSVRYRPGLDLVLRDLSLHVHGGEKVGIVGRTGAGKSSMTLCLFRILEAAKGEIRIDGLNVADIGLHDLRSQLTIIPQDPILFSGTLRMNLDPFGSYSEEDIWWALELSHLHTFVSSQPAGLDFQCSEGGENLSVGQRQLVCLARALLRKSRILVLDEATAAIDLETDNLIQATIRTQFDTCTVLTIAHRLNTIMDYTRVLVLDKGVVAEFDSPANLIA-ARGIFYGMARDAGL 1526

The following BLAST results are available for this feature:

BLAST of TCONS_00005135-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00005135-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MRP3	0.000e+0	48.13	Canalicular multispecific organic anion transporte...	[more]

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TCONS_00005135-protein (polypeptide) - C. hemisphaerica