TCONS_00004833-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004833-protein
Unique NameTCONS_00004833-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004833-protein ID=TCONS_00004833-protein|Name=TCONS_00004833-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MGKKLSKHRLGTNQFTTFESSQSNAVSGAGGASSGAGKPPSSSGLASQGE
VIINRESIRSLALMNGLLYIGDTEGIVNVFDLEQKQQKETLKVHTKAVTR
IVDGPGDSYFTASRDKSVSKRMLGSTDGAKMEGHRLAVTALAMKPDLAKV
MSGSRDGNVIIWDTNTCLLEQQEEIARNIVTDIVWFDSSQAIQCGEDKTV
KLWDCRRLHVLDTLPMKQYFQSCCAVNDTQLVTGSVGGNGRGCHVTLWDL
RERREIVTLNGHEQSLSSVAYFTNRNNQLRIISIADDCYVKVWDPARQEC
ACSLYVPGAQGLTAMIQLSEDSFIIGSIQGALYEVRYKCDPTEQIEITST
M
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002742XLOC_002742Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004833TCONS_00004833Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 191..205
score: 33.32
coord: 150..164
score: 36.87
coord: 281..295
score: 31.44
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 207..249
e-value: 87.0
score: 4.8
coord: 252..294
e-value: 0.0098
score: 25.1
coord: 84..122
e-value: 170.0
score: 2.9
coord: 124..163
e-value: 0.0011
score: 28.3
coord: 164..204
e-value: 3.7
score: 13.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 256..294
e-value: 0.098
score: 13.5
coord: 131..163
e-value: 4.7E-4
score: 20.8
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 259..294
score: 9.138
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 131..166
score: 13.65
NoneNo IPR availableGENE3D2.80.10.50coord: 153..232
e-value: 6.4E-12
score: 44.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 12..152
e-value: 1.1E-12
score: 47.2
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 233..341
e-value: 2.6E-12
score: 45.9
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 150..164
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 131..303
score: 20.514
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 57..337

Blast
[Close]
BLAST of TCONS_00004833-protein vs. Swiss-Prot (Human)
Match: WDR31 (WD repeat-containing protein 31 OS=Homo sapiens GN=WDR31 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.893e-37
Identity = 88/294 (29.93%), Postives = 151/294 (51.36%), Query Frame = 0 
Query:   62 ALMNGLLYIGDTEGIVNVFDLEQKQQKETLKVHTKAVTRIVDGPGDS-YFTASRDKSVSKRMLGSTDGAKME--GHRLAVTALAMKPDLAKVMSGSRDGNVIIWDTNTCLLEQQEEIARNIVTDIVWFDSSQAI-QCGEDKTVKLWDCRRLHVLDTLPMKQYFQSCC--AVNDTQLVTGSVGGNGRGCHVTLWDLRE-RREIVTLNGHEQSLSSVAYFTNRNNQLRIISIAD-DCYVKVWDPARQECACSLYVPGAQGLTAMIQLSEDSFIIGSIQGALYEVRYKCDPTEQIEI 347
            AL + L   G  +  V  ++ +     +  K H   +T++   P  S +F+ASRD+ V    L  +   + +  GH + VT LA+ PD +++ +GSRD  +++WD  T    ++  ++RN+VT + W      I Q  EDKT++LWD R L V    P KQ+ Q+ C  +V+  + ++ S G  G GC  TLWDLR+ R  I    GH Q+++S  +       + +I+ +  DC VK+W+     C  +L + G+  LT++      S +  S    ++ +R   D ++ +E+
Sbjct:   70 ALNSDLCVSGGKDKTVVAYNWKTGNVVKRFKGHEHEITKVACIPKSSQFFSASRDRMVMMWDLHGSSQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQHIQTYCEVSVDGHKCISCSNGFGGEGCEATLWDLRQTRNRICEYKGHFQTVASCVFLPRALALMPLIATSSHDCKVKIWNQDTGACLFTLSLDGSGPLTSLAVGDAISLLCASFNRGIHLLRM--DHSQGLEL 361
The following BLAST results are available for this feature:
BLAST of TCONS_00004833-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR311.893e-3729.93WD repeat-containing protein 31 OS=Homo sapiens GN... [more]
back to top