TCONS_00004397-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004397-protein
Unique Name	TCONS_00004397-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	410

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004397-protein ID=TCONS_00004397-protein|Name=TCONS_00004397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=410bp
MCDVNLDKLEAEQEMVRKAKLRNMSVCMKCKIAKPAVVIRINDPMCKECF
LQYATHKFRSTLGKSKLVKANDKVLLAVSGGHTSRAMVHLVTEALSEKAH
KRLRFSPGIVFIDESFTLKNDIEKETLKFQEEMKKHGYPFYTVPVHQNST
GKDEFLKNFETVSTLTAKTDYIEKLRLRLIVETAVQHGYNKIMLGENATT
LSMKLLSNISQGRGISLPKDVAVGDDRYPDVMVVRPMRELSSKEVVMYNR
FEDLPSLILPNLHTMAETGASLQRQTEEFINGLQVEFPSTVSTVFRTGDK
LCSNASYDNNNEKCAFCQGTISKEKMEFNEPVDVSCGKKGGCCGSSDECS
SNKFKLNTDDIKANLCYGCNLTFKDMSLNVASFPLQTLETISTNIKRAKM
KETIQDFLLE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002458	XLOC_002458	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004397	TCONS_00004397	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014729	Rossmann-like_a/b/a_fold
IPR019407	CTU2

Vocabulary: **Molecular Function**
Term	Definition
GO:0000049	tRNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0034227	tRNA thio-modification
GO:0002098	tRNA wobble uridine modification

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034227	tRNA thio-modification
biological_process	GO:0002098	tRNA wobble uridine modification
molecular_function	GO:0000049	tRNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	3.40.50.620		coord: 43..353 e-value: 6.8E-26 score: 90.5
IPR019407	Cytoplasmic tRNA 2-thiolation protein 2	PFAM	PF10288	CTU2	coord: 271..370 e-value: 9.4E-15 score: 54.7
IPR019407	Cytoplasmic tRNA 2-thiolation protein 2	HAMAP	MF_03054	CTU2	coord: 27..377 score: 27.764
None	No IPR available	SUPERFAMILY	52402	Adenine nucleotide alpha hydrolases-like	coord: 48..257

Blast

[Close]

BLAST of TCONS_00004397-protein vs. Swiss-Prot (Human)
Match: CTU2 (Cytoplasmic tRNA 2-thiolation protein 2 OS=Homo sapiens GN=CTU2 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.208e-42
Identity = 94/279 (33.69%), Postives = 141/279 (50.54%), Query Frame = 0

Query:  159 FETVSTLTAKTDYIEKLRLRLIVETAVQHGYNKIMLGENATTLSMKLLSNISQGRGISLPKDVAVGDDRYPDVMVVRPMRELSSKEVVMYNRFEDLPSLILPNLHTMAETGASLQRQTEEFINGLQVEFPSTVSTVFRTGDKLC----SNASYDNNNEKCAFC-----------------QGTISKEKMEFNEPVDVSCGKKGGCC----GSSDECSSNKFKLNTDD--IKANLCYGCNLTFKDMSLNVASFPLQTLETISTNIKRAKMKETIQDFLLE 410
            F +V TLTAK + ++ LR  LI+  A  HGY+K+M G++ T L++KL++N++ GRG  L  D    D+R+ DV+VVRPMR+ + KEV  YNR   +PS+  P + T A   AS+ R  E FI  LQ +FPSTVSTV+RT +KL        +  ++  +C  C                 Q +    +M+   P+  +    G CC    G +  C     +       I+  LCY C +  KD+  ++   P   L       +RA   + I+D L+E
Sbjct:  229 FCSVRTLTAKEELLQTLRTHLILHMARAHGYSKVMTGDSCTRLAIKLMTNLALGRGAFLAWDTGFSDERHGDVVVVRPMRDHTLKEVAFYNRLFSVPSVFTPAVDTKAPEKASIHRLMEAFILRLQTQFPSTVSTVYRTSEKLVKGPRDGPAAGDSGPRCLLCMCALDVDAADSATAFGAQTSSRLSQMQSPIPLTETRTPPGPCCSPGVGWAQRCGQGACRREDPQACIEEQLCYSCRVNMKDLP-SLDPLPPYILAEAQLRTQRAWGLQEIRDCLIE 506

HSP 2 Score: 110.923 bits (276), Expect = 1.618e-26
Identity = 51/124 (41.13%), Postives = 78/124 (62.90%), Query Frame = 0

Query:   27 CMKCKIAKPAVVIRINDPMCKECFLQYATHKFRSTLGKSKLVKANDKVLLAVSGGHTSRAMVHLVTEALSEKAHKRLRFSPGIVFIDESFTLKNDIEKETLKFQEE---MKKHGYPFYTVPVHQ 147
            C+KCK A+P VVIR  D  C++CF  +  HKFR+ LGK++L+   +KVLLA SGG +S +MV  V E LS+ + KRLRF  G++F+DE       +E+ +    E    ++  G+P++ V + +
Sbjct:   28 CVKCKEAQPVVVIRAGDAFCRDCFKAFYVHKFRAMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACGQSLEERSKTLAEVKPILQATGFPWHVVALEE 151

The following BLAST results are available for this feature:

BLAST of TCONS_00004397-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004397-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CTU2	9.208e-42	33.69	Cytoplasmic tRNA 2-thiolation protein 2 OS=Homo sa...	[more]

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TCONS_00004397-protein (polypeptide) - C. hemisphaerica