TCONS_00004179-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004179-protein
Unique NameTCONS_00004179-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length227

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004179-protein ID=TCONS_00004179-protein|Name=TCONS_00004179-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
MPKSKRNKVVSLSKTTKKGFELKKDLVSQIQACCDEFASLYIFSVEDMRN
QKLKDVRQHWRTSRFFFGKNKVMTIALGRTKEDEYKENLHKVSEQLSGNV
GLMFTNEQDHKVKEWFSSFTEPDYARSGNKATKTITLPAGPLDENSYPHN
MEPALRSLSLPTELKKGIIHLTTDYTVCKKDEVLSPEQCRVLKLFFEQLA
SFHLVLKSLWTSDGKFTVLEDVEDEDE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002329XLOC_002329Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004179TCONS_00004179Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001790Ribosomal_L10P
IPR033867Mrt4
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
GO:0000027ribosomal large subunit assembly
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005622 intracellular
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001790Ribosomal protein L10PPFAMPF00466Ribosomal_L10coord: 21..119
e-value: 7.5E-21
score: 74.0
IPR033867Ribosome assembly factor Mrt4CDDcd05796Ribosomal_P0_likecoord: 21..185
e-value: 6.20172E-87
score: 255.966
NoneNo IPR availableSUPERFAMILY160369Ribosomal protein L10-likecoord: 20..148

Blast
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BLAST of TCONS_00004179-protein vs. Swiss-Prot (Human)
Match: MRT4 (mRNA turnover protein 4 homolog OS=Homo sapiens GN=MRTO4 PE=1 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 1.042e-91
Identity = 124/222 (55.86%), Postives = 168/222 (75.68%), Query Frame = 0 
Query:    1 MPKSKRNKVVSLSKTTKKGFELKKDLVSQIQACCDEFASLYIFSVEDMRNQKLKDVRQHWRTSRFFFGKNKVMTIALGRTKEDEYKENLHKVSEQLSGNVGLMFTNEQDHKVKEWFSSFTEPDYARSGNKATKTITLPAGPLDENSYPHNMEPALRSLSLPTELKKGIIHLTTDYTVCKKDEVLSPEQCRVLKLFFEQLASFHLVLKSLWTS-DGKFTVLED 221
            MPKSKR+K VSL+KT KKG ELK++L+ +++ C D +  L+IFSV +MRN KLKD+R  W+ SR FFGKNKVM +ALGR+  DEYK+NLH+VS++L G VGL+FTN    +V EWF+ +TE DYAR+GNKA  T++L  GPL++  +PH+MEP LR L LPT LK+G++ L +DY VCK+ +VL+PEQ RVLKLF  ++A F + +K +W S  G+F  + D
Sbjct:    1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYTEMDYARAGNKAAFTVSLDPGPLEQ--FPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGDVLTPEQARVLKLFGYEMAEFKVTIKYMWDSQSGRFQQMGD 220
The following BLAST results are available for this feature:
BLAST of TCONS_00004179-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MRT41.042e-9155.86mRNA turnover protein 4 homolog OS=Homo sapiens GN... [more]
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