TCONS_00004096-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004096-protein
Unique NameTCONS_00004096-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1502

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004096-protein ID=TCONS_00004096-protein|Name=TCONS_00004096-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1502bp
MCELAEILFLYYKDFEMPFDIFQDLALLFRRHHFGTSQVNQKLLTLNGLV
QIQKFELISSMILVEGIDLEVIRKTTAEDISEIKDHSLLQNENWKKIDKL
LYSWDDMEQQGPVLIAWTIFRHMCLPQDEKHLTAHFGESAMRCNVMLYLR
HILDFPSYKKLGDGVSCLLKSHVYILVSMVLKVFQEDTLGDFKNLIEIAS
KVLEEPILSSLFLMEDQTGGIGLLLKSAKRCFPHAVLPYIHLLKSVCTDA
DSADIVFDSLESQETFTELFGLNAVDEISAVDDRIWQRKISRKIIEMDND
SIILDQGVYGRTFQDREDARLIQWNMSYSGWLYALLELNKIIESPMTYTT
GSGEDGISVAKEYISLVSAILTSRPDKINEFEPIIGSLIVLIKRLSHLKT
CPIDLMTECLKCLNLVMLKQPLEVWHHLTKIQFLPFQKKSSLSSNEMLPG
SYGNILTTVEIPNHMYDVTKEYLQIIMTLLELPYETLINAGKQNELYMDL
AVNIVLIIKEIFSHFGRWKFSSAEDKELIALKCLEIFHQLLSPKNEESLL
IKEKNLPSLKEIVSDGLLYHGAGESLLAIISVGVDSLSVTLHNDVRQGTD
VIQVLKLSFAVLNHLLTSVEKKATLTPLEEVLSQHFVQQPSDLDFMHPFC
NMTMLSVIAKFIFHQQDPKLPILAVLTLRTLAIRFPLILTSSLGDALIGI
RNAFVNRLNGRVEAIRLKVAILEFLSSCVESQPGIIECFINIQQDKEKKT
VVGQFSCLPAILEILENKQQVDVLTSTALEFVAALWKNRYDGAMSILKNS
KTFWESVTSSLKLGSSSEAATYEPLQHSLNIIGTETYYIKSGQFDERLKA
QLTPLCNENFYKNILKVFEPHTDTVLCQKKIAVMKSFQTLITVMSKLEDD
YCSLCKKEVKDLLSSSITKIMKQWVFSEDVSKNRNVIVEIASFTWLLIRT
WKGTIVEHQDIVSTLTECLTELSTSDRTIFAEVVFPVYMSILALLQTQNK
AVIGSTLYLNLLKLVIQNLHHHDEKSEQFTKHTQVNIASISLMTELVLQI
SKDSLPSVIETFQSRGTIQNLLRDMTINLQKRIDLEYVETVLRFMLSSSQ
KDLIAEHLHQCGIGKFKCLNLNNVQAARKSSQVAREIWSLILSLTARLLK
KLRFTFLQVAVDFLGAYEEDIFQSMNLMEEMTNGSCLLISEQIAILCFEL
AHYDHDIEFLLPDIHQKLKYGVAQMVKLSVALLARQKLITHLTEFKSTDD
LHQMIRGTKEPSPVSFRSDSVRSGYSTADFEKLTGLAEVAQNRLISILCY
CLGSLRRITPSVVEAILDEGMDIDSFTPLVDFKFNSPTLEMEDNPTFGSL
LACVNIALKMIYKLVQGDSEHVTPEKDVFNTSLPTDADKQRSHLWFIVEN
SLIVTISQASCYLRHPNINEGGKQFLKRELGSELTNIRHAVQRYRSRRGI
PPSPESSERLSASSMSSFRRSPSKLSSSISLNEEEENSVLKLVDTYTRYL
LR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002282XLOC_002282Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004096TCONS_00004096Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018864Nucleoporin_Nup188
Vocabulary: Molecular Function
TermDefinition
GO:0017056structural constituent of nuclear pore
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0017056 structural constituent of nuclear pore
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018864Nucleoporin Nup188PFAMPF10487Nup188coord: 1..743
e-value: 3.2E-75
score: 253.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1443..1479

Blast
BLAST of TCONS_00004096-protein vs. Swiss-Prot (Human)
Match: NU188 (Nucleoporin NUP188 homolog OS=Homo sapiens GN=NUP188 PE=1 SV=1)

HSP 1 Score: 527.324 bits (1357), Expect = 1.302e-159
Identity = 435/1589 (27.38%), Postives = 765/1589 (48.14%), Query Frame = 0
Query:    4 LAEILFLYYKDFEM-PFDIFQDLALLFRRHHFGTSQVNQKLLTLNGLVQIQKFELISSMILVEGIDLEVIRKTTAEDISEIKDHSLLQNE-NWKKIDKLLYSWDDMEQQGPVLIAWTIFRHMCLPQDEKHLTAHFGESAMRCNVMLYLRHILDFPSYKKLGD----GVSCLLKSHVYILVSMVLKVFQEDTLGDFKNLIEIASKVLEEPILSSLFLMEDQTGGIGLLLKSAKRCFPHAVLPYIHLLKSVCTDADSADIVFDSLESQETFTELFGLNAVDEISAVDDRIWQRKISRKIIEMDNDS-IILDQGVYGRTFQDREDARLIQWNMSYSGWLYALLELNKIIESPMTYTTGSGEDGISVAKEYISLVSAILTSRPDKINEFEPIIGSLIVLIKRLSHLKTCPIDLMTECLKCLNLVMLKQPLEVWHHLTKIQFLPF--QKKSSLS----SNEMLPGSYGNILTTVEIPNHMYDVTKEYLQIIMTLLELPYETLINAGKQNELYMDLAVNIVLIIKEIFSHFGRWKFSSAEDKELIALKCLEIFHQLLSPKNEESLLIKEKNLPSLKEIVSDGLLYHGAGESLLAIISVGVDSLSVTLHNDVR--------QGTDVIQVLKLSFAVLNHLLTSVEKKATLTPLEEVLSQHFVQQPSDLDFMHPFCNMTMLSVIAKFIFHQQDPKLPILAVLTLRTLAIRFPLILTSSLGDALIGIRNAFVNRLNGRVEAIRLKVAILEFLSSCVESQPGIIECFINIQ----QDKEKKTVVGQFSCLPAILEILENKQQ-----VDVLTSTALEFVAALWKNRYDGAMSILKNSKTFWESVTSSL-----KLGSSSEAATYEPLQHSLNIIGTETYYIKSGQFDERLKAQLTPLCNEN---FYKNILKVFEPH---TDTVLCQK--KIAVMKSFQTLITVMSKLEDDYCSLCKKEVKDLLSSSITKIMKQWVFSEDVSKNRNVIVEIASFTWLLIRTWKGTIVEHQDIVSTLTECLTELSTSDRTIFAEVVFPVYMSILALLQTQNKAV------------IGSTLYLNLLKLVIQNLH--------------HHDE--KSEQFTKHTQVNIASISLMTELVLQISKDSLPSVIETFQSRGTIQNLLRDMTINLQKRIDLEYVETVLRFMLSSSQKDLIAEHLHQCGIGKFKCLNLNNV------------QAARKSSQVAR--EIWSLILSLTARLLKKLRFTFLQVAVDFLGAYEEDIFQSMNLMEEMTNGSCLLISEQIAILCFELAHYDHDIEFLLPDIHQKLKYGVAQMVKLSVALLARQKLITHLTEFKSTDDLHQMIRGTKEPSPVSFRSDSVRSGYSTADFEKLTGLA-EVAQNRLISILCYCLGSLRRITPSVVEAILDEGMDIDSFTPLVDFKFNSPTLEMEDNPTFGSLLACVNIALKMIYKLVQGDSEHVTPEKDVFNTSLPTDADKQR---SHLWFIVENSLIVTISQASCYLRHPNINEGGKQFLKRELGSELTNIRHAVQRYRSRRGIPPSPESSERLSASSMSSFRRSPSKLSSSIS-LNEEEENSVLKLVDTYTRYLLR 1502
            L EI+FLYY  FEM P D+   L  +F+   FG+ Q N+ L+       + +    S++ILVEG+D+E + K   +D  E+  H   Q+    + +D L+ ++ D+    PVL+AW + RH   P++   +    G +A++ NV  YL  +L   S    G+      +C+    VY L+S VL   +  TLG+ +++I+ A +VL +P L  LF   + T G+G++L S    FPH + P + LL+++ +   +A  V+  L+    + EL+     D IS  D  +W+R+  + +  +   + + + QG  G+   D + A L++W  SYS W     E+  ++      +T          K  I LV  ++++     +   PI   + +L++RL+ + + P+D++  C+ CL ++  + P +VW  L    FLPF     SSLS    +  M  G YGN+L   E P   Y VT  +L++I TL++    +  + G        L   ++ ++KE+   + +W+++S   +E I    LE+ H +L+  +E  L     + PSL+ +    L Y  AG++++ I+ +GVD++ + +    R        QG  +I+ +KL+F+V N+++        ++PLE+ LSQH                  +++V+AK+I+H+ DP LP LA+  L+ LA   P+ + + LG+    IR+AF+ RL  ++E +R+KV ILEFL+  VE+QPG+IE F+N++     D  K+  +G +SCL A+LE+++++QQ       +L   A+ F+ ALW++R D AM +L+    FWE++TS L         +SE +  E     + II  E YY+  G  D+ LK  L     E    ++   +K    H   T+   C    +  ++ S   ++ +++    D   L    V+  L   +    K  +          +     +   +L+R WK  +    +I+  LTE L  +  +D+ +  +    V+ + + +LQ +   V            +  TL   ++ L  Q  H                D+  +S    +   V +  + L  EL  ++ +D   S ++  +    +  LL  + ++L+ + +L + E  L  +L+ ++    A  +   GI +  CL L +V             A+RKS        ++ L +SL  +LLK LR+ FL  A+DF+G ++E   Q +N +  + + +CL  ++       +L+++  +  F LP + + ++  +  + +   +LL  +K++ H  + K+ D L   +    +  P +  +    S    AD E     A    Q  L+ IL   L +LR  TP V + +LD+ +D+  +  L    F +PT + E  P+FG+LLA VN+AL M+ +L +        E       L T A+  R   S L F +EN   + ISQA  YLR P ++   KQ +K+EL SEL+ +  ++ RY  RRG P SP           +    SP   S+S+S  + E +  +++LV  + R++ R
Sbjct:  214 LLEIIFLYYAYFEMAPSDLLV-LTKMFKEQGFGSRQTNRHLVDETMDPFVDRIGYFSALILVEGMDIESLHKCALDDRREL--HQFAQDGLICQDMDCLMLTFGDIPHHAPVLLAWALLRHTLNPEETSSVVRKIGGTAIQLNVFQYLTRLLQ--SLASGGNDCTTSTACMC---VYGLLSFVLTSLELHTLGNQQDIIDTACEVLADPSLPELFWGTEPTSGLGIILDSVCGMFPHLLSPLLQLLRALVSGKSTAKKVYSFLDKMSFYNELYKHKPHDVISHEDGTLWRRQTPKLLYPLGGQTNLRIPQGTVGQVMLD-DRAYLVRWEYSYSSWTLFTCEIEMLLH---VVSTADVIQHCQRVKPIIDLVHKVISTDLSIADCLLPITSRIYMLLQRLTTVISPPVDVIASCVNCLTVLAARNPAKVWTDLRHTGFLPFVAHPVSSLSQMISAEGMNAGGYGNLLMNSEQPQGEYGVTIAFLRLITTLVKGQLGSTQSQG--------LVPCVMFVLKEMLPSYHKWRYNSHGVREQIGCLILELIHAILNLCHETDL--HSSHTPSLQFLCICSLAYTEAGQTVINIMGIGVDTIDMVMAAQPRSDGAEGQGQGQLLIKTVKLAFSVTNNVIRLKPPSNVVSPLEQALSQHGAH------------GNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGNDAAAIRDAFLTRLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSDGSKEFSLGMWSCLHAVLELIDSQQQDRYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTSPLFGTLSPPSETSEPSILETCALIMKIICLEIYYVVKGSLDQSLKDTLKKFSIEKRFAYWSGYVKSLAVHVAETEGSSCTSLLEYQMLVSAWRMLLIIATTHADIMHLTDSVVRRQLFLDVLDGTKALLLVPASVNCLRLGSMKCTLLLILLRQWKRELGSVDEILGPLTEILEGVLQADQQLMEKTKAKVFSAFITVLQMKEMKVSDIPQYSQLVLNVCETLQEEVIALFDQTRHSLALGSATEDKDSMETDDCSRSRHRDQRDGVCVLGLHLAKELC-EVDEDG-DSWLQVTRRLPILPTLLTTLEVSLRMKQNLHFTEATLHLLLTLARTQQGATAVAGAGITQSICLPLLSVYQLSTNGTAQTPSASRKSLDAPSWPGVYRLSMSLMEQLLKTLRYNFLPEALDFVGVHQERTLQCLNAVRTVQSLACLEEADHTVGFILQLSNFMKEWHFHLPQLMRDIQVNLGYLCQACTSLLHSRKMLQHYLQNKNGDGLPSAVAQRVQRPPSAASAAPSSSKQPAADTEASEQQALHTVQYGLLKILSKTLAALRHFTPDVCQILLDQSLDLAEYNFLFALSFTTPTFDSEVAPSFGTLLATVNVALNMLGELDKKK------EPLTQAVGLSTQAEGTRTLKSLLMFTMENCFYLLISQAMRYLRDPAVHPRDKQRMKQELSSELSTLLSSLSRY-FRRGAPSSPA----------TGVLPSPQGKSTSLSKASPESQEPLIQLVQAFVRHMQR 1749          
The following BLAST results are available for this feature:
BLAST of TCONS_00004096-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NU1881.302e-15927.38Nucleoporin NUP188 homolog OS=Homo sapiens GN=NUP1... [more]
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