TCONS_00003950-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003950-protein
Unique NameTCONS_00003950-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length215

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003950-protein ID=TCONS_00003950-protein|Name=TCONS_00003950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MNEQRYFLNPESVSKHLFCSICQDVYNEPQRAPCGHSFCKECIFRWLSQS
KTCPEDRRTVTKKDLHYDFILANIIGDQMVACPFRSRGCVHVGKLELLAT
HRKNCTFNPINLPDFMKEDAKNSTVNSAGNCSNMNSDSDDDDDKLPTPAK
PSLKMRLFCDENKRELLRSVFEKNSPKDSTSASSFSSNRNQWLGKKPKGS
KENKRPRVITIDDSF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002209XLOC_002209Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003950TCONS_00003950Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 19..56
e-value: 3.6E-8
score: 43.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 19..57
score: 13.006
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 19..54
e-value: 1.18751E-8
score: 47.8256
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 19..54
e-value: 3.8E-12
score: 45.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..150
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..215
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 11..83
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 77..138
e-value: 7.6E-7
score: 28.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 9..76
e-value: 1.5E-18
score: 65.6
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 34..43
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 79..113

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003950-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top