TCONS_00003924-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003924-protein
Unique NameTCONS_00003924-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length631

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003924-protein ID=TCONS_00003924-protein|Name=TCONS_00003924-protein|organism=Clytia hemisphaerica|type=polypeptide|length=631bp
MSTPLYILQSEYWIRVNLALEYCIKEALIDVLYNSHNDASYHGLPTNPSA
LYQRLLQCKQDKRNRLHKVLKSDQWNTLCPQNQLSNPEDWDITLLIAVLR
TVVGLKPIGGWDIKNLSPGDQSIGAYLYLVRKLRNELKHGAVTDISDLLT
FKTFWSRIEDILLGLQYKDMQKFYDLEKCSLDKHNSLIHAMIGNLMKDTN
DNTKDIQNLQQNINQQATSKADKNDVQDLSDEVKNVKDEKADKNELKDLS
DEVKNVKDEKADKNQLKALEDRMKNLEIKDESIQSRDHTVEHWNIYDPVS
VFYGRKELIKNIHSELDSNQRVVLTGLGGVGKTQTVAKFTQLYKDEYQKV
FWIAADNLNKTMDEIIRYFGLGQYLPKDPSTEILVKLLLSKVCKVEEKTL
IVLDDVTNLSSKDFKSFLRHVKDKLSLLMTSQLTDWEDLAVTNIKVPCFE
EYESVGFLEGQIHHASAEDISTLVGHLQCYPLALHQAICYIRKLKIAVPS
YIEQFEACRKSVLSMKIKSFSDYDKTLLTVWDMAFHKIKEESKNAILVLT
MMGYMDNKRINKKTFTYLDNIDEIDVEEIVQLLGQYSLVNERNGFLEIHA
LVQKMLRYCVEEQNLVEDECPKKLVMDTIAG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002197XLOC_002197Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003924TCONS_00003924Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR000897SRP54_GTPase_dom
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 219..286
NoneNo IPR availableGENE3D3.40.50.300coord: 288..450
e-value: 4.6E-15
score: 54.9
NoneNo IPR availableGENE3D3.40.50.300coord: 56..287
e-value: 0.071
score: 11.6
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 318..457
e-value: 0.0031
score: 26.8
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainPFAMPF00448SRP54coord: 321..357
e-value: 2.9E-5
score: 23.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 285..548

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003924-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top