TCONS_00003406-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003406-protein
Unique NameTCONS_00003406-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1056

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003406-protein ID=TCONS_00003406-protein|Name=TCONS_00003406-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1056bp
KMAYVFVRNVRHVLRPAIGVSTINHLKFTHASSFVSLVESPVRSTLKTNF
FSTFNPARTASIATAGTEKSQLENEEATAPETIPQTQQRSKRNYKYNTTK
TKEAHLKRFNETLLKGEALTSEQAFHFIKSCGPQMIGESSVVRNELVDQI
WQGIQSNGVPLEIPLWNTLLSVFIDNRCVEFEPIDFLSKLWETSAAEPNL
TTFNLLIRAYAMKADPVGAMKIVDYMVKNNTRMTEQTYSWLIQAFAKKGD
TKAVDEILSTMGELGIKPRQVTYGRLIDAYAENGDLESINKIINEMAENN
VYPSSQTYVYMLESLAHGGHLNLLSTVWERIQNVECLAEDVKPLVLTCVI
NGYYDFAFELLQLTTQKTSSSKSSYHFYIERRLFNLLYYCRKNTNEYLKA
LTLTEKVFDQPPNSRLRYLIEFFVSKNDTDKAIDLIKELEPSQMKTQLFH
PILRGAAAQKNVEAIVDVLQEMSNLNVPVDFYCTNIISPAVGEPGSEEHK
LYATSLKGKEDIGIPFNTLAGLLQTDDCSIKELTSLVKNAASGDVFGSLV
QIKKKVISEFNADDASQIMKLLQEKGMRDITILTFEIIKSLQTDAEVVEG
MNFVKNLMELDVPISSETYTSVLRSLRRHGLSDEFFMFVRIMKEHGIEPD
IHQYYQMLNMAAMVGNSMAAQFCFNKVVDTSEFKEMRPRLYNWLIKAYGK
DSEANKVLPNYLRGNFSESAQKTINLFQEMKQAEYEPSPFTVSTVIRSYL
QNGDFDGASQLIQEHGEDELKMNNIIQTDFIRAYITQKRYEDAELLFEKL
KGESKVTLPQYNEMLRMYEIRGDVTKSESLYQEMLQSDFRPNASTYAVRI
RTYLTAKQPERCIEIIEENISGKNDLRVELFMVVLRNLVPTGQVDCVKKM
IDLIKKHHSSKVPPHRLNEALILVNIKAGNIEEASALLPRAEEQAISEEE
QTSEPALNPYRKAAKSAHLDGDVDYIENLIKFLKNNDLYYQTLDTFYLLA
LNKMNKVDDIKQLYEERIAEGFQPTEKFMSLLQQIIEVRNLQDFTQRSAV
VDEPVE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001901XLOC_001901Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003406TCONS_00003406Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 931..951
NoneNo IPR availableGENE3D3.30.2320.10coord: 261..335
e-value: 2.7E-10
score: 39.5
coord: 218..260
e-value: 9.6E-6
score: 24.8
coord: 587..678
e-value: 6.9E-5
score: 22.1
coord: 702..787
e-value: 5.6E-9
score: 35.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..91
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 740..764
e-value: 0.19
score: 12.0
coord: 811..838
e-value: 0.49
score: 10.7
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 640..700
e-value: 0.0012
score: 18.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 618..651
e-value: 1.5E-4
score: 19.7
coord: 811..843
e-value: 0.0017
score: 16.4
coord: 271..304
e-value: 2.9E-4
score: 18.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 269..316
e-value: 2.9E-9
score: 36.8
coord: 198..247
e-value: 1.5E-8
score: 34.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 773..803
score: 6.073
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 234..268
score: 10.095
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 269..303
score: 10.041
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 304..338
score: 5.908
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 199..233
score: 8.736
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 162..198
score: 5.053
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 445..479
score: 6.018
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 807..841
score: 9.262
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 738..772
score: 7.903
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 615..649
score: 10.073
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 990..1024
score: 5.294
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 842..876
score: 5.546
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 788..1039
e-value: 5.5E-14
score: 51.7
coord: 344..477
e-value: 0.013
score: 14.6

Blast
[Close]
BLAST of TCONS_00003406-protein vs. Swiss-Prot (Human)
Match: LPPRC (Leucine-rich PPR motif-containing protein, mitochondrial OS=Homo sapiens GN=LRPPRC PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 4.945e-33
Identity = 105/386 (27.20%), Postives = 183/386 (47.41%), Query Frame = 0 
Query:  107 KRFNETLLKGEALTSEQAFHFIKSCG---PQMIGESSVVRNELVDQIWQGIQSNGVPLEIPLWNTLLSVFIDNRCVEFEPIDFLSKLWETSAAEPNLTTFNLLIRAYAMKADPVGAMKIVDYMVKNNTRMTEQTYSWLIQAFAKKGDTKAVDEILSTMGELGIKPRQVTYGRLIDAYAENGDLESINKIINEMAENNVYPSSQTYVYMLESLAHGGHLNLLSTVWERIQNVECLAEDVKPLVLTCVINGYYDFAFELLQLTTQKTSSSKSSY-HFYIERRLF------NLLYYCRKNTNEYLKALTLTEKVFDQPPNSRLRYLIEFFVSKNDTDKAIDLIKEL--EPSQMKTQLFHPILRGAAAQKNVEAIVDVLQEMSNLNVPVD 480
            K FN+T   G  L    A   ++SCG   P++  E    R E   +IW  +Q  G   ++  +N LL V++ N   +F P DFL+K+ E +  +PN  T+  LI +Y    D  GA KI+ +M   +  +TE  +S L+   A+ GD +  + IL+ M + GI+P   TY  L++AYAE GD++ + + + ++ ++ ++   +  + ++ S +  G+   +S + E++        D   L+L  V     D A ++L           S +  F+++  +        L  YC+K          L E      P   L++ +   +  N TD A  L+K +  E   ++   F P+L G   +KNV+ I+++L+ M  L V  D
Sbjct:  107 KVFNDTCRSG-GLGGSHALLLLRSCGSLLPELKLEE---RTEFAHRIWDTLQKLGAVYDVSHYNALLKVYLQNE-YKFSPTDFLAKM-EEANIQPNRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPDTYLALLNAYAEKGDIDHVKQTLEKVEKSELHLMDRDLLQIIFSFSKAGYPQYVSEILEKVTCERRYIPDAMNLILLLVTEKLEDVALQILLACPVSKEDGPSVFGSFFLQHCVTMNTPVEKLTDYCKK----------LKEVQMHSFP---LQFTLHCALLANKTDLAKALMKAVKEEGFPIRPHYFWPLLVGRRKEKNVQGIIEILKGMQELGVHPD 473
The following BLAST results are available for this feature:
BLAST of TCONS_00003406-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LPPRC4.945e-3327.20Leucine-rich PPR motif-containing protein, mitocho... [more]
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