TCONS_00003304-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003304-protein
Unique NameTCONS_00003304-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length612

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003304-protein ID=TCONS_00003304-protein|Name=TCONS_00003304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=612bp
MPATSLINSHVTDLDFASREEERFNNFYEDILSLHELLDQIQNISLRRQF
RDIINKVEDDFSNDVDFTTPRCCQYNTLRLGVIGGSLSGKSSLIQRYITG
TNPKEDVMPGKHKKTVTIRGQSNLLLIRDETGPPDYFFSLWADAVVLVFS
LSDEHSFNVISSYYAKMITYRNENTNLLPCILVGIKDDSIINDNLSDGSG
NHPGVAETRVKKFISDHRKCPYFEVSLETGENVNEVFQTGAEKISILQNL
TPGGGTSHDQLMSASFTSLNTLDSERGLGSSFNGSHSSFKKNKRRNTLFS
LNAEKKEKLKEKEKEKDKDKDVTYDDIGSGRSIPIKQGNLYKRSSGSLKE
WKKKFVVVTDDQTFQYYPSMKNYMEDEHVKAFKLIHTTVKTPGKRGSKPS
QSTPHKGHRRSLSTNNLLIPSPSKTPVPPETNQSSECFVISNNIANDTTD
GGLVNMSNGSPTIHHDIPIGRTSSDGKDHGTSNNRATLSQDTYPIKKKYK
HRNKSCELDYHPDTGGXTNTGISHANSIIIRIRAAKYIRTWTGFCFHLPR
PSLKRKHIEDKKALRLQKSQGWMDERQIQRIAIISSRWYIMTVERVTLNA
LLWRIVMHGYQP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001837XLOC_001837Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003304TCONS_00003304Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR011993PH_dom-like
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
50100150200250300350400450500550600Expect = 5.0E-4 / Score = -65.5Expect = 6.3E-6 / Score = -24.6Expect = 8.1E-5 / Score = -49.6Expect = 3.3E-18 / Score = 65.1Score = 10.194Expect = 7.9E-14 / Score = 51.5Expect = 6.6E-12 / Score = 44.8Score = Score = SequenceCoilPR00449SM00174SM00173SM00175G3DSA:3.40.50.300PS51419PF00071G3DSA:2.30.29.30SSF50729SSF52540
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 295..322
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 222..244
score: 32.9
coord: 176..189
score: 37.65
coord: 78..99
score: 33.79
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 80..248
e-value: 5.0E-4
score: -65.5
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 75..247
e-value: 6.3E-6
score: -24.6
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 78..247
e-value: 8.1E-5
score: -49.6
NoneNo IPR availableGENE3D3.40.50.300coord: 73..249
e-value: 3.3E-18
score: 65.1
NoneNo IPR availablePROSITEPS51419RABcoord: 62..287
score: 10.194
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 82..244
e-value: 7.9E-14
score: 51.5
IPR011993PH domain-likeGENE3D2.30.29.30coord: 329..513
e-value: 6.6E-12
score: 44.8
IPR011993PH domain-likeSUPERFAMILY50729PH domain-likecoord: 326..396
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 74..243

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003304-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
MPATSLINSHVTDLDFASREEERFNNFYEDILSLHELLDQIQNISLRRQFRDIINKVEDDFSNDVDFTTPRCCQYNTLRLGVIGGSLSGKSSLIQRYITGTNPKEDVMPGKHKKTVTIRGQSNLLLIRDETGPPDYFFSLWADAVVLVFSLSDEHSFNVISSYYAKMITYRNENTNLLPCILVGIKDDSIINDNLSDGSGNHPGVAETRVKKFISDHRKCPYFEVSLETGENVNEVFQTGAEKISILQNLTPGGGTSHDQLMSASFTSLNTLDSERGLGSSFNGSHSSFKKNKRRNTLFSLNAEKKEKLKEKEKEKDKDKDVTYDDIGSGRSIPIKQGNLYKRSSGSLKEWKKKFVVVTDDQTFQYYPSMKNYMEDEHVKAFKLIHTTVKTPGKRGSKPSQSTPHKGHRRSLSTNNLLIPSPSKTPVPPETNQSSECFVISNNIANDTTDGGLVNMSNGSPTIHHDIPIGRTSSDGKDHGTSNNRATLSQDTYPIKKKYKHRNKSCELDYHPDTGGXTNTGISHANSIIIRIRAAKYIRTWTGFCFHLPRPSLKRKHIEDKKALRLQKSQGWMDERQIQRIAIISSRWYIMTVERVTLNALLWRIVMHGYQP50100150200250300350400450500550600Expect = 8.15e-72 / Id = 36.64SequenceAGAP1
Match NameE-valueIdentityDescription
AGAP18.145e-7236.64Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
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