TCONS_00003260-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003260-protein
Unique NameTCONS_00003260-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003260-protein ID=TCONS_00003260-protein|Name=TCONS_00003260-protein|organism=Clytia hemisphaerica|type=polypeptide|length=450bp
MGRVVYKHGKELVTCYFVGFIILFGGTYLIYIIEKVGAETSTIDNMANGL
YWAMITVTSVGYGDISPETWAGKLMTGVFALVGCAFFALPAGILGSGFAL
QVAKQKKQLRFIKVRNPAAVVIQTCWRYYSVKSKQEHLEGTWFFFFPRVP
KDEEANLTYFKLLPGMQDVLDGKYAPRSTKSNLDSKTNSPNKGKEKKGGV
FNMGKFKQNLNVPRPDGNVQKKGDRDVSRRGQRFQKLRRSVRNSRKKSNY
QPGDDIPLCNLINNQYKEAIRFVLKVKLFNYIKHFKNVRYPFVNVQDIME
KNTLAHTETMSHLKHIEDEMTQVKLEMRALRSLLFKIHKFPPPQVNFHKQ
PDSDSETDTFYDLSAISEADEVNNNDIQIVITTNNDTSNDPGNVNGSVVI
PSNASGSDANDHIGNGVVVTTNNEVFDPESDDVDPTDTGLGCDTNSNVDT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001816XLOC_001816Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003260TCONS_00003260Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR013099K_chnl_dom
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006813 potassium ion transport
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 313..333
NoneNo IPR availableGENE3D1.10.287.70coord: 9..112
e-value: 4.0E-23
score: 80.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..253
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 425..450
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 10..112
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 43..65
score: 38.68
coord: 72..98
score: 32.72
IPR013099Potassium channel domainPFAMPF07885Ion_trans_2coord: 20..96
e-value: 2.7E-13
score: 49.6

Blast
[Close]
BLAST of TCONS_00003260-protein vs. Swiss-Prot (Human)
Match: KCNQ2 (Potassium voltage-gated channel subfamily KQT member 2 OS=Homo sapiens GN=KCNQ2 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 4.546e-47
Identity = 119/386 (30.83%), Postives = 186/386 (48.19%), Query Frame = 0 
Query:    1 MGRVVYKHGKELVTCYFVGFIILFGGTYLIYIIEKVGAETSTIDNMANGLYWAMITVTSVGYGDISPETWAGKLMTGVFALVGCAFFALPAGILGSGFALQVAKQKKQLRFIKVRNPAAVVIQTCWRYYSVKSKQEHLEGTWFFF--FPRVPKDEEANLTY--FKLLPGMQDVLDGKYAPRSTKSNLDSKTN-----------SPNKGKEKKGGVFNM--GKFKQNLNV-------PR---------PDGNVQKK---------------------GDRDVSRRGQRFQKLRRSVRNSRKKSNYQPGDDI-----PLCNLINNQ----YKEAIRFVLKVKLFNYIKHFKNVRYPFVNVQDIMEKNTLAHTETMSHLKHIEDEMTQV 323
            +G VVY H KELVT +++GF+ L   ++L+Y+ EK   E    D  A+ L+W +IT+T++GYGD  P+TW G+L+   F L+G +FFALPAGILGSGFAL+V +Q +Q  F K RNPAA +IQ+ WR+Y+    +  L  TW ++     VP       TY   +L+P +  +            NL SK+            SP+KG   +G +     G+  Q +++       PR         P     ++                     GDR  +R+  R  K   S +NS + S   PG+DI       C  +        K +IR V  ++     + FK    P+ +V D++E+ +  H + +S +K ++  + Q+
Sbjct:  221 LGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEK--GENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTWQYYERTVTVPMYSSQTQTYGASRLIPPLNQL--------ELLRNLKSKSGLAFRKDPPPEPSPSKGSPCRGPLCGCCPGRSSQKVSLKDRVFSSPRGVAAKGKGSPQAQTVRRSPSADQSLEDSPSKVPKSWSFGDRSRARQAFRI-KGAASRQNSEEAS--LPGEDIVDDKSCPCEFVTEDLTPGLKVSIRAVCVMRFLVSKRKFKESLRPY-DVMDVIEQYSAGHLDMLSRIKSLQSRVDQI 592
The following BLAST results are available for this feature:
BLAST of TCONS_00003260-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNQ24.546e-4730.83Potassium voltage-gated channel subfamily KQT memb... [more]
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