TCONS_00003212-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003212-protein
Unique NameTCONS_00003212-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1223

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003212-protein ID=TCONS_00003212-protein|Name=TCONS_00003212-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1223bp
MHLYQLTLQKSSAIYNAVHGNFSGTKTQDIVVSRGKVLELLRPDHNTGKV
HPVFATEVFGVIRDMMAFRLTGGTKDYLAIGSDSGRIVILEYLPAKNCFE
KVHQETFGKSGCRRIVPGQFLAADPKGRAIMISAMEKQKFVYILNRDAQA
RLTISSPLEAHKAHNIVYHCVGIDVGFENPMFACLEVDYEESDMDHTGEA
AQTSQQTLTFYELDLGLNHVVRKYSEPLEEYANMLISVPGGNDGPSGVII
CSENYLTYKNFGDQQDIRCPIPRRKNDLDDNERSMIFVCSATYKTKSMFF
FLVQSEQGDIFKVTLETDDDMVTEIRIKYFDTIPVASAMCVLKTGFLFAA
SEFGNHALYQITHLGDDDEEPEFSSLMATELDEGETFFFHARDLQNLVCV
DEMESLAPIMHCKVADLANEDTPQLYAACGRGPRSSLRVLRHGLEVSEMA
VSELPGNPTSVWTVKRNVTDEQDSYIVVSFVNATLVLSIGETVEEVTDSG
FLGTTPTLSCSLLGEDALLQIYPDGIRHIRSDRRINEWKTPGKKSIIQCA
VNERQIVIALSGNELVYFELDQSGQLNEYTERKEMSAEVVCMALGPVPAS
EQRSRFLAVGLGDNTVRIISLDPNDCLEPLSMQALPAPGESLCIIEMGGS
GATEHGEQATTGGLFLSIGLANGVLLRTVLDNVTGDLSDTRIRYLGSKPV
KLFDVKTYGSHSVLAMSSRTWLSYTYQSRFHLTPLSYESLEYASSFASEQ
CPEGIVAISGNTLRILALEKLGAVFNQVTTPLRYTPRKFTIDHQTGSIIM
IETDHNAMTSLFKSDRKQKIAEEMVEACGNDSEARAAESKVAASFLNTDM
VEAQFGAPKAGVSKWASIIRVIDPIRGETHYEVELDQDEAAFSICVAEFA
SRPGERFLIVGCAFKMTLNPHTCLTASIHTYRIHQNDRGRVYLEFLHKTP
VDDVPGALAGFQGRLLAGVGRILRIYDIGKKKLLRKCENKKIATFITGIE
TTGYRIVANDIQESFHCLKYKKNDNQLVLFADDTHPRFLTCGCILDYDTV
AGADKFGNVFFQRLPTDVKDDVEEDPTGVKALWDRGVLNGASQKMDTVSV
YHIGETLLSLQKAVLIPGGSESLVYTTLSGGVGMLVPFTSREDIDFFQHL
EMHMRQENPPLCGRDHLWYRSSYSPVKNTCDGDLCEQFNSLEYSKRKAIA
EELDKTPAEVSKKLEDIRTRYAF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001773XLOC_001773Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003212TCONS_00003212Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
IPR004871Cleavage/polyA-sp_fac_asu_C
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF10433MMS1_Ncoord: 76..594
e-value: 1.7E-181
score: 604.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 22..522
e-value: 0.0027
score: 16.3
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 530..1082
e-value: 5.4E-18
score: 64.6
IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminalPFAMPF03178CPSF_Acoord: 866..1189
e-value: 2.0E-87
score: 293.4
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 532..627
coord: 900..1066

Blast
[Close]
BLAST of TCONS_00003212-protein vs. Swiss-Prot (Human)
Match: SF3B3 (Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4)

HSP 1 Score: 1914.43 bits (4958), Expect = 0.000e+0
Identity = 902/1224 (73.69%), Postives = 1062/1224 (86.76%), Query Frame = 0 
Query:    1 MHLYQLTLQKSSAIYNAVHGNFSGTKTQDIVVSRGKVLELLRPDHNTGKVHPVFATEVFGVIRDMMAFRLTGGTKDYLAIGSDSGRIVILEYLPAKNCFEKVHQETFGKSGCRRIVPGQFLAADPKGRAIMISAMEKQKFVYILNRDAQARLTISSPLEAHKAHNIVYHCVGIDVGFENPMFACLEVDYEESDMDHTGEAAQTSQQTLTFYELDLGLNHVVRKYSEPLEEYANMLISVPGGNDGPSGVIICSENYLTYKNFGDQQDIRCPIPRRKNDLDDNERSMIFVCSATYKTKSMFFFLVQSEQGDIFKVTLETDDDMVTEIRIKYFDTIPVASAMCVLKTGFLFAASEFGNHALYQITHLGDDDEEPEFSSLMATELDEGETFFFHARDLQNLVCVDEMESLAPIMHCKVADLANEDTPQLYAACGRGPRSSLRVLRHGLEVSEMAVSELPGNPTSVWTVKRNVTDEQDSYIVVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALLQIYPDGIRHIRSDRRINEWKTPGKKSIIQCAVNERQIVIALSGNELVYFELDQSGQLNEYTERKEMSAEVVCMALGPVPASEQRSRFLAVGLGDNTVRIISLDPNDCLEPLSMQALPAPGESLCIIEMGGS-GATEHGEQATTGGLFLSIGLANGVLLRTVLDNVTGDLSDTRIRYLGSKPVKLFDVKTYGSHSVLAMSSRTWLSYTYQSRFHLTPLSYESLEYASSFASEQCPEGIVAISGNTLRILALEKLGAVFNQVTTPLRYTPRKFTIDHQTGSIIMIETDHNAMTSLFKSDRKQKIAEEMVEACGNDSEARAAESKVAASFLNTDMVEAQFGAPKAGVSKWASIIRVIDPIRGETHYEVELDQDEAAFSICVAEFASRPGERFLIVGCAFKMTLNPHTCLTASIHTYRIHQNDRGRVYLEFLHKTPVDDVPGALAGFQGRLLAGVGRILRIYDIGKKKLLRKCENKKIATFITGIETTGYRIVANDIQESFHCLKYKKNDNQLVLFADDTHPRFLTCGCILDYDTVAGADKFGNVFFQRLPTDVKDDVEEDPTGVKALWDRGVLNGASQKMDTVSVYHIGETLLSLQKAVLIPGGSESLVYTTLSGGVGMLVPFTSREDIDFFQHLEMHMRQENPPLCGRDHLWYRSSYSPVKNTCDGDLCEQFNSLEYSKRKAIAEELDKTPAEVSKKLEDIRTRYAF 1223
            M LY LTLQ+++ I  A+HGNFSGTK Q+IVVSRGK+LELLRPD NTGKVH +   EVFGVIR +MAFRLTGGTKDY+ +GSDSGRIVILEY P+KN FEK+HQETFGKSGCRRIVPGQFLA DPKGRA+MISA+EKQK VYILNRDA ARLTISSPLEAHKA+ +VYH VG+DVGFENPMFACLE+DYEE+D D TGEAA  +QQTLTFYELDLGLNHVVRKYSEPLEE+ N LI+VPGG+DGPSGV+ICSENY+TYKNFGDQ DIRCPIPRR+NDLDD ER MIFVCSAT+KTKSMFFFL Q+EQGDIFK+TLETD+DMVTEIR+KYFDT+PVA+AMCVLKTGFLF ASEFGNH LYQI HLGDDDEEPEFSS M   L+EG+TFFF  R L+NLV VDE++SL+PI+ C++ADLANEDTPQLY ACGRGPRSSLRVLRHGLEVSEMAVSELPGNP +VWTV+R++ DE D+YI+VSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLG+DAL+Q+YPDGIRHIR+D+R+NEWKTPGKK+I++CAVN+RQ+VIAL+G ELVYFE+D SGQLNEYTERKEMSA+VVCM+L  VP  EQRSRFLAVGL DNTVRIISLDP+DCL+PLSMQALPA  ESLCI+EMGG+    E GE+ + G L+L+IGL NGVLLRTVLD VTGDLSDTR RYLGS+PVKLF V+  G  +VLAMSSR+WLSY+YQSRFHLTPLSYE+LE+AS FASEQCPEGIVAIS NTLRILALEKLGAVFNQV  PL+YTPRKF I  ++ ++I+IETDHNA T   K+ RKQ++AEEMVEA G D    AAE  +AA+FLN ++ E+ FGAPKAG  +WAS+IRV++PI+G T   V+L+Q+EAAFS+ V  F++   + +++VG A  + LNP +     ++TY++  N      LEFLHKTPV++VP A+A FQGR+L GVG++LR+YD+GKKKLLRKCENK IA +I+GI+T G+R++ +D+QESF  ++YK+N+NQL++FADDT+PR++T   +LDYDTVAGADKFGN+   RLP +  D+V+EDPTG KALWDRG+LNGASQK + +  YH+GET+LSLQK  LIPGGSESLVYTTLSGG+G+LVPFTS ED DFFQH+EMH+R E+PPLCGRDHL +RS Y PVKN  DGDLCEQFNS+E +K+K ++EELD+TP EVSKKLEDIRTRYAF
Sbjct:    1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQFLAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPGGSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMP--LEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAE--MAAAFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEK---LEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIRTRYAF 1217
The following BLAST results are available for this feature:
BLAST of TCONS_00003212-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SF3B30.000e+073.69Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF... [more]
back to top