TCONS_00003206-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003206-protein
Unique NameTCONS_00003206-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length350

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003206-protein ID=TCONS_00003206-protein|Name=TCONS_00003206-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
MVDAENRMLVAALKRKPQNLNFSNKNLSYLPESIGKITSVRCLDLKNNHL
TELPDDLSSLAELKLINLGNNKFKEIPHVLREFKCLETLHLFNNELHELC
PSTLGLLTCLVLLNLNQNYLVEIPCTINRLSYLQLLSINGNQLLQIPEEI
CHLSQLKELNINDNFIQSLPRKIAFLRKLKILRARRNRLTEIPEEICQCG
SLEILDVACNAIQSFPVQIFNLKLDELHCEQNQMLRNEPVHSIQEEEVLS
LKEIVARFILKATKQCSTSKLGKQLKMFPEIQQMFSEGSECAICHTPFLN
VWLECVRFVDTKKLMKTKNNAGVLPIRGLLCSYKCFNSVGHDFFGIAQAV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001769XLOC_001769Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003206TCONS_00003206Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 60..79
e-value: 240.0
score: 3.2
coord: 176..195
e-value: 8.7
score: 14.2
coord: 199..218
e-value: 290.0
score: 2.5
coord: 153..172
e-value: 18.0
score: 11.7
coord: 130..149
e-value: 460.0
score: 1.0
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 37..59
e-value: 20.0
score: 10.8
coord: 83..106
e-value: 28.0
score: 9.6
coord: 200..222
e-value: 44.0
score: 8.0
coord: 153..175
e-value: 17.0
score: 11.4
coord: 107..129
e-value: 120.0
score: 4.3
coord: 176..199
e-value: 0.083
score: 22.0
coord: 60..82
e-value: 35.0
score: 8.8
coord: 130..152
e-value: 100.0
score: 5.1
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 87..140
e-value: 8.1E-10
score: 37.8
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 141..283
e-value: 3.9E-19
score: 68.1
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 15..86
e-value: 4.4E-14
score: 51.6
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 17..239
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 40..96
e-value: 3.5E-8
score: 33.0
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 109..130
score: 5.664
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 39..60
score: 7.134
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 178..199
score: 6.472
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 62..83
score: 6.133
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 85..106
score: 5.879
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 155..177
score: 6.78
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 201..222
score: 6.156
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 132..153
score: 6.018

Blast
[Close]
BLAST of TCONS_00003206-protein vs. Swiss-Prot (Human)
Match: LRC69 (Leucine-rich repeat-containing protein 69 OS=Homo sapiens GN=LRRC69 PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 4.129e-67
Identity = 134/345 (38.84%), Postives = 205/345 (59.42%), Query Frame = 0 
Query:    7 RMLVAALK--RKPQNLNFSNKNLSYLPESIGKITSVRCLDLKNNHLTELPDDLSSLAELKLINLGNNKFKEIPHVLREFKCLETLHLFNNELHELCPSTLGLLTCLVLLNLNQNYLVEIPCTINRLSYLQLLSINGNQLLQIPEEICHLSQLKELNINDNFIQSLPRKIAFLRKLKILRARRNRLTEIPEEICQCGSLEILDVACNAIQSFPVQIFNLKLDELHCEQNQMLRNEPVHSIQEEEVLSLKEIVARFILKATKQCSTSKLGKQLKMFPEIQQMFSEGSECAICHTPFLNVWLECVRFVDTKKLMKTKNNAGVLPIRGLLCSYKCFNSVGHDFFGIAQA 349
            R+L+ AL   +  + +  + K ++ +P ++GK+  ++ L L+NN + ++  +L +L +L  +NLGNN  +E+P  ++    L+ LHL  N +    P     L  L+LLNLN N+L ++P  ++RL  L  +SIN NQL  IP E+C L  L EL +N N +  +P +I FL+KL+ L   RN +  +PEE+C    L ILD+A N IQ FP    +LKL E +CE N +   +PV S Q+E V SL+EI +RF++    + +   L   ++ +P+++ M S+G  CAIC   F+ VWLECVRFV   K  K   N  ++P++ L+CSYKCF     + FGIAQ 
Sbjct:    4 RLLIKALSGGKNTKIITLNGKKMTKMPSALGKLPGLKTLVLQNNLIPKVCPELCNLTQLTTLNLGNNLLEEVPEEMKYLTSLKNLHLSGNRICRFAPGACDGLQNLILLNLNNNHLTQLPQEVSRLKSLTYMSINYNQLASIPRELCFLENLVELQLNYNQLICIPEEIKFLKKLQKLLLARNNIGVLPEELCDLKKLRILDIAGNIIQIFPSGFQDLKLREFYCEGNPLFLQQPVISTQQENVWSLQEITSRFVMNQLAE-NNPFLMDDIERYPQVRSMISQGKTCAICGQYFITVWLECVRFVPPPKDWKISKNLKLVPLQVLICSYKCFTQRDPNLFGIAQV 347
The following BLAST results are available for this feature:
BLAST of TCONS_00003206-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC694.129e-6738.84Leucine-rich repeat-containing protein 69 OS=Homo ... [more]
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