TCONS_00003100-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003100-protein
Unique NameTCONS_00003100-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length858

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003100-protein ID=TCONS_00003100-protein|Name=TCONS_00003100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=858bp
EIQKWLKLIYALRKNLYEIKEECYQNIGKYVSEEVKDGKYQGDFGDDRRA
NKALGQTLDLKYPWLKWNVLSYDAFDNDDQAFDVNQGYYNAPSDEENRER
VIVATPVDPYATYSYDVKQKIINVLKEAPKIKGPLMAALYYQSDPVFKCA
KDKGECIKEFKENLKVHDLWKYVQSFVILNPKIDVSIRENHPNSFIHQVF
EYLPSHHTNMVIKYKFEFILMLKSEEMVYESNTCAKKCFGDSACVKLPFS
KLSECQCEENFDGPECKDHSKNGLAASLNNLVQTTIQVPSLTDIYYDLKN
LHKVMDAGDLEMESVLDELKGSLEKSFQRVTNELGKSFQWTNLNIKYADT
ISELRHFTNEFKMRSKKHNDQGGKTLASYILQPGHIKKWLSELHILFTGS
NFIVQDHKPLMIMYMDRYHQQNTCSPTYKNHIDNAFRQFAILQQEAYVMW
AEALDLMDEDTDVVDELYKQRFKDQDALYTNLTCKYNVVNSVNIKCSGIG
RYIHSSMVFENQCKPNFFIKGPVKSTCKDAVKPLCLPCSCYAPGSIGEEC
GDQTGQCNCQKSFYGVQCQNKDCVWNVWSGFGSCTRSCGYNSHQTRSRTS
IQKHGHGKPCQGPNQQTRSCFQKCCPGWFHCSNKKKCIEGHLKCDYNNNC
GDSQDESDQLCQEKCSVQHSPWKEVGNGQDVWTLEGQHVQCPAGSVMQSF
KLERSGKSQRYQYRCCNWNVVNALGKSYQYTKWSGQTKYVQDLRQLQVKC
FTNQIVTSFKILVKSHKQNIWNPRRYYMKYDYQCAEIKNQKHKERMRCQE
VATAWGTQGKGKTQELDRHHVNCATRMGPRWFLNGFILEWKSNTSQIRYK
FWCCRVAV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001721XLOC_001721Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003100TCONS_00003100Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
IPR002172LDrepeatLR_classA_rpt
IPR013032EGF-like_CS
IPR000742EGF-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 575..626
e-value: 3.2E-5
score: 33.4
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 572..626
score: 11.023
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 572..621
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSMARTSM00192LDLa_2coord: 623..663
e-value: 5.2E-5
score: 32.6
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 623..662
score: 10.625
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 623..661
NoneNo IPR availableGENE3D2.30.90.10coord: 573..620
e-value: 6.1E-8
score: 32.6
NoneNo IPR availableGENE3D4.10.400.10coord: 621..673
e-value: 3.9E-6
score: 26.5
NoneNo IPR availableCDDcd00055EGF_Lamcoord: 537..568
e-value: 4.07824E-4
score: 38.1042
NoneNo IPR availableCDDcd00112LDLacoord: 624..658
e-value: 3.37048E-4
score: 38.3418
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 255..266
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 230..267
score: 10.071

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003100-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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