TCONS_00003008-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00003008-protein
Unique Name	TCONS_00003008-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1046

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00003008-protein ID=TCONS_00003008-protein|Name=TCONS_00003008-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1046bp
MDFDDDMDDLDQILSNLPSEDTINKADDSADELLDILMDEPPPTITKPNI
KSAAKSDVSDESSEDETDELKQAEIAALEAKLALLRSQKSKKKKKSKSDL
SDSPENEKPKLKVKIEAEEKSSLVEEALCSHKKKFSDCFFCDEKQSKSPI
VASTPFKVEQNNEEPSKPNKIESSSKEKESSPKNNGFYGKKERIAHVPKK
AAPPKPVEKEPTAKTNNVKRNDKNLSSGCGYEFVGISIRNPMISSAVLDE
RMKGRRVIKISHIESKMKNYDIEGDWVTMGVLVDKMPQKTTSNGKNFSVW
KLSDLGMGSENVLMAFFLFGEVNKEHWKTQNGAVIALLNPSITKRKEDNS
ISISIDNPKKLMEIGTSRDLATCKGVRKSDGRSCTMFINKQYGDYCEFHV
QKAFKKAKAGRMELQSGGSKGPRNGTTSKNQKGHLMNDMKKSIDMGDYHY
GGKTLSLSENKKRNNVKLQKTSNGAGAGGGGLRSIVSSDVKALAAKDLQE
TKMKREKQKLELQGGTEEFKELLNVPTVGARNLHKLLKGDQVKEEEIKVP
KSKCNSARSFLRNTKQEFLQTNPQLNRNLSPSIPKPDPAQKKRKLCDVEF
FETTTSSDKKDKPKKLSVDKRNESNEREMTFESDEKVKRRKSSTDQTTNN
LTPNGGDKTNNLTLNSGDKATKRTLNGGDKITKSTLNDGDRTTKSTLNGG
DKTTKSTLNGGDKTNKATPNGGDKTERKDEENNNQEPIRKKEKINLNKLI
LDKSKAPMLGRGLRNSKSDFEEDFLCYDKYTGEDTSVSQISYGNDKGLTE
TLERSTNKQKLQQNGPALKPTKAKLAAIQKIRSKGGIHDNEDKKNKQQTS
EHIKARLENSLDKSNDEGAGDENDEVPKKKRKKGLLQDIFGELDPNSEEA
IKLHKAKSKNVGAVRLAEAEREDKYFAALEKKEAMEQKMINTTEIKVRLY
ACKVCNYKAESLLKKCLDEKHLHVKLPDRIKRFFACKNCKHKAIGYDCLL
PKNPCSKCGGTSFERSSMVNERKGPKMGAETLELRGREQKYANSLA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001647	XLOC_001647	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00003008	TCONS_00003008	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015411	Rep_factor_Mcm10_C
IPR015408	Znf_Mcm10/DnaG

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006260	DNA replication

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005634	nucleus

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 75..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 832..851
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 568..741
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 805..824
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 857..881
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 411..433
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..70
IPR015411	Replication factor Mcm10, C-terminal	SMART	SM01280	Mcm10_2	coord: 523..1044 e-value: 1.2E-42 score: 157.7
IPR015411	Replication factor Mcm10, C-terminal	PFAM	PF09332	Mcm10	coord: 816..1044 e-value: 9.9E-52 score: 176.4
IPR015408	Zinc finger, Mcm10/DnaG-type	PFAM	PF09329	zf-primase	coord: 365..411 e-value: 3.7E-17 score: 61.7

Blast

[Close]

BLAST of TCONS_00003008-protein vs. Swiss-Prot (Human)
Match: MCM10 (Protein MCM10 homolog OS=Homo sapiens GN=MCM10 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 2.804e-47
Identity = 128/393 (32.57%), Postives = 201/393 (51.15%), Query Frame = 0

Query:  229 CGYEFVGISIRNPMISSAVLDERMKGRRVIKISHIESKMKNYDIEG-DWVTMGVLVDKMPQKTTSNGKNFSVWKLSDLGMGSENVLMAFFLFGEVNKEHWKTQNGAVIALLNPSITKRKEDN-SISISIDNPKKLMEIGTSRDLATCKGVRKSDGRSCTMFINKQYGDYCEFHVQKAFKKAKAGRMELQSGGSKG------PRNGTTSKNQKGHLMNDMKKSIDMGDYHYGGKTLSLSENKKRNNV----KLQKTSNGAGAGGGGLRSIVSSDVKALAAKDLQETKMKREKQKLELQGGTEEFKELLNVPTVGARNL-HKLLKGDQVKEEEIKVPKSKCNSARSFLRNTKQ---------------EFLQTNPQLNRNLSPSIPKPDPAQKKR 593
            C   F G+ +R P +SS  ++++M GR++I++S I+ KM    +E  DWVT GV++ K+  ++ ++GK FS+WKL+DL   ++ V  + FLFGEV+K  WKT+ G V+ +LN +  K K+ +  + +SID+P+K++ +G + DL TCK  +K +G  CT  +N +  +YC++HVQ  +KK  A R +LQS  S G       R GT+           +K+ +    ++YGG + +         V    K+Q T +     G  L               +QET+ K    +  L   +EEFKEL+++PT GARNL   L K           P  K  SA + L+  KQ                FLQ++ ++     PS  +  PAQ  R
Sbjct:  246 CVEAFSGLRLRRPRVSSTEMNKKMTGRKLIRLSQIKEKMAREKLEEIDWVTFGVILKKVTPQSVNSGKTFSIWKLNDLRDLTQCV--SLFLFGEVHKALWKTEQGTVVGILNANPMKPKDGSEEVCLSIDHPQKVLIMGEALDLGTCKA-KKKNGEPCTQTVNLRDCEYCQYHVQAQYKKLSAKRADLQSTFSGGRIPKKFARRGTS-----------LKERLCQDGFYYGGVSSASYAASIAAAVAPKKKIQTTLSNLVVKGTNL--------------IIQETRQKLGIPQKSL-SCSEEFKELMDLPTCGARNLKQHLAKATASGIMGSPKPAIKSISASALLKQQKQRMLEMRRRKSEEIQKRFLQSSSEVESPAVPSSSRQPPAQPPR 609

HSP 2 Score: 129.028 bits (323), Expect = 2.446e-30
Identity = 91/226 (40.27%), Postives = 128/226 (56.64%), Query Frame = 0

Query:  828 IQKIRSKGGI----HDNEDKKNKQ--QTSEHIKARLE-NSLDKSNDEGAGDENDEVPKKKRKKGLLQDIFGELDPNSEEAIKLHKAKSKNVGAVRLAEAEREDKYFAALEKKEAMEQKMINTTEIKVRLYACKVCNYKAESLLKKCLDEKHLHVKLPDRIKRFFACKNCKHKAIGYDCLLPKNPCSKCGGTSFERSSMVNERKGPKMGAETLELRGREQ-KYANSL 1045
            I K+R+KG +    + N  KK ++  Q    +K R+E N++  S  E   DE +   KK+R++         L+  SEE  K+ KAKSK+ G ++ AEAE +++YF  L KKE ME+KM N  E+K R+  CK C Y    LL+ C+ E+H      D +KRFF C  C +++I  D  LP   CS CG   +ER  M+ E+ GPK+G ETL  RG E  K+ NSL
Sbjct:  663 ITKLRAKGQVLTKTNPNSIKKKQKDPQDILEVKERVEKNTMFSSQAE---DELEPARKKRREQ------LAYLE--SEEFQKILKAKSKHTGILKEAEAEMQERYFEPLVKKEQMEEKMRNIREVKCRVVTCKTCAYTHFKLLETCVSEQH-EYHWHDGVKRFFKCP-CGNRSISLD-RLPNKHCSNCGLYKWERDGMLKEKTGPKIGGETLLPRGEEHAKFLNSL 874

The following BLAST results are available for this feature:

BLAST of TCONS_00003008-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00003008-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MCM10	2.804e-47	32.57	Protein MCM10 homolog OS=Homo sapiens GN=MCM10 PE=...	[more]

You are here

TCONS_00003008-protein (polypeptide) - C. hemisphaerica