TCONS_00002995-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002995-protein
Unique NameTCONS_00002995-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length151

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002995-protein ID=TCONS_00002995-protein|Name=TCONS_00002995-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MTSALEDPSLERHFKGHRDAVTCLDFNPNMKQLVSGSMDSSLMVFHFKPH
MRAYRFVGHKDAITSVSFSPSGHLIASGSRDKTVRLWVPSVKGESTVFKA
HMATVRSVDFSRDGQSLLTSSDDKSLKLWAVHRQKFQFSLTGHMNWVRCA
R
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001642XLOC_001642Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002995TCONS_00002995Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 75..89
score: 42.2
coord: 117..131
score: 31.17
coord: 33..47
score: 29.7
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 7..46
e-value: 3.9E-8
score: 43.0
coord: 49..88
e-value: 2.0E-9
score: 47.3
coord: 91..130
e-value: 2.0E-5
score: 34.0
IPR001680WD40 repeatPFAMPF00400WD40coord: 56..87
e-value: 2.4E-10
score: 40.7
coord: 11..45
e-value: 3.8E-7
score: 30.6
coord: 96..129
e-value: 6.2E-7
score: 29.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 98..139
score: 13.85
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 14..48
score: 11.845
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 56..87
score: 16.724
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 4..85
e-value: 5.0E-25
score: 87.6
NoneNo IPR availableGENE3D1.10.10.670coord: 86..148
e-value: 3.6E-15
score: 55.1
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 14..151
score: 34.486
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 7..150

Blast
[Close]
BLAST of TCONS_00002995-protein vs. Swiss-Prot (Human)
Match: POC1A (POC1 centriolar protein homolog A OS=Homo sapiens GN=POC1A PE=1 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 2.418e-81
Identity = 112/146 (76.71%), Postives = 129/146 (88.36%), Query Frame = 0 
Query:    6 EDPSLERHFKGHRDAVTCLDFNPNMKQLVSGSMDSSLMVFHFKPHMRAYRFVGHKDAITSVSFSPSGHLIASGSRDKTVRLWVPSVKGESTVFKAHMATVRSVDFSRDGQSLLTSSDDKSLKLWAVHRQKFQFSLTGHMNWVRCAR 151
            EDPSLERHFKGHRDAVTC+DF+ N KQL SGSMDS LMV+H KP  RAYRF GHKDA+T V+FSPSGHL+ASGSRDKTVR+WVP+VKGESTVF+AH ATVRSV F  DGQS +T+SDDK++K+WA HRQKF FSL+ H+NWVRCA+
Sbjct:    7 EDPSLERHFKGHRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFSLSQHINWVRCAK 152
The following BLAST results are available for this feature:
BLAST of TCONS_00002995-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
POC1A2.418e-8176.71POC1 centriolar protein homolog A OS=Homo sapiens ... [more]
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