TCONS_00002993-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002993-protein
Unique NameTCONS_00002993-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length253

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002993-protein ID=TCONS_00002993-protein|Name=TCONS_00002993-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MRSNPNYDVVKEPRGFIKCLEVFLAIFAFACATGYRGNLKIDQTSPDAQP
KAHDAQGTIQYPFSQILEMPFIKPGTNGTMHTYTLEVDQRSKIEFFVFIG
VMCFLYSLGMLVYYIFFEENNTMNATPVTSSWLSPPIIDFGLGAFWTLFW
FFSACAFAAGVNALKDQVNIESLTGDGGAFAEPCSNGYKCGGTNPKYATM
TVAILLGFLNVFVWAGNIWFLYKETPWHNKSLASAGAPSTVQQPPSQPAA
AAI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001640XLOC_001640Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002993TCONS_00002993Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001285Synaptophysin/porin
IPR008253Marvel
IPR013833Cyt_c_oxidase_su3_a-hlx
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0004129cytochrome-c oxidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0008021synaptic vesicle
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0022904respiratory electron transport chain
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022904 respiratory electron transport chain
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
cellular_component GO:0008021 synaptic vesicle
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0005215 transporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001285Synaptophysin/synaptoporinPRINTSPR00220SYNAPTOPHYSNcoord: 17..39
score: 47.1
coord: 95..119
score: 47.67
coord: 204..222
score: 51.75
IPR008253Marvel domainPFAMPF01284MARVELcoord: 10..220
e-value: 1.1E-26
score: 93.5
IPR008253Marvel domainPROSITEPS51225MARVELcoord: 9..226
score: 15.514
IPR013833Cytochrome c oxidase, subunit III, 4-helical bundleGENE3D1.20.120.80coord: 82..235
e-value: 0.0011
score: 18.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 234..253

Blast
[Close]
BLAST of TCONS_00002993-protein vs. Swiss-Prot (Human)
Match: SYPH (Synaptophysin OS=Homo sapiens GN=SYP PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 3.065e-29
Identity = 75/241 (31.12%), Postives = 114/241 (47.30%), Query Frame = 0 
Query:    6 NYDVVKEPRGFIKCLEVFLAIFAFACATGYRGNLKIDQTSPDAQPKAHDAQGTIQYPFSQILEMPFIKPGTNGTMHTYTLEVDQRSKIEFFVFIGVMCFLYSLGMLVYYIFFEENNTMNATPVTSSWLSPPIIDFGLGAFWTLFWFFSACAFAAGVNALKDQVNIESLTGDGGAFAEPCSNGYKCGG-TNPKYATMTVAILLGFLNVFVWAGNIWFLYKETPWHNKSL-ASAGAPSTVQQP 244
             + VVKEP GF+K L+   AIFAFA    Y G L++     +        +   +YPF ++ ++ F  P   G      L  D  S  EFFV + V  FLYS+G L  YIF +     N           P++DF   A +   W  S+ A+A G++ +K   + E++  +     +    G  C    +P  + +  +++ GFLN+ +W GN+WF++KET W    L A  GAP     P
Sbjct:   18 QFRVVKEPLGFVKVLQWVFAIFAFATCGSYSGELQLSVDCANKTESDLSIEVEFEYPF-RLHQVYFDAPTCRGGTTKVFLVGDYSSSAEFFVTVAVFAFLYSMGALATYIFLQNKYRENN--------KGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENIIKEMPVCRQ---TGNTCKELRDPVTSGLNTSVVFGFLNLVLWVGNLWFVFKETGWAAPFLRAPPGAPEKQPAP 246
The following BLAST results are available for this feature:
BLAST of TCONS_00002993-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYPH3.065e-2931.12Synaptophysin OS=Homo sapiens GN=SYP PE=1 SV=3[more]
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