TCONS_00002954-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002954-protein
Unique NameTCONS_00002954-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1002

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002954-protein ID=TCONS_00002954-protein|Name=TCONS_00002954-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1002bp
TGVILSLILQLPFRFSKPLIFVLLFFLVNKKVRMPRSRKAEISPENIIQT
SRRSRKKVNYDEKIIQKDENDDSDFEPEQNIRTPISSRKRKNAPSSTRKP
VSSSDDNIPLKMLSKRMDEKATVTDEANKNNSSTVLMLQESTLGRPNLSE
DESSDSDDEQITFKSVPDNFLKENPFKGVVENTESQYDRKEAKLESLSVS
ENEDTNKVAEKLSSDKDSQPSEAKNVIKTKPTSSIKKLSKRKSDSKLENA
SKKQKLTTSKQKKKPNRKEISKKKLDKSSNEKLDLADIMSNGNFDVGFSS
DEESETWEEVNEVTMTSPSKKIKVEDQNVDVKDVQISVGVTSIHQKKKRK
TRQEKIFIWLRQMAGRILRERKQLLHKCHILCFFASSLKKNEICNNPTNQ
AICLSMLPLNHAEMQEGKMQNWGLPQITRLVTWFQKEIPSCTEFTLYIDK
EAEQIKTLNRIHILTMILRALGFLTRLVASFQPISPKVKDSDSNPNSPTL
KNEDEKKPSTSKQKDPTSSKKNNTKKSEKEVKSPYFKNEDSKSSIKKGSS
SKDSKTRNKEAIPISSTKRSKTSNKKEKIETPRSEGRRRNTKKVNYNEEK
MLPTEESDSDSEDEFEESGKLKKKTPAKKMPQNKDRKGKPNKDKDFIPPK
KGPPKGLSKVSTVPGIDYWVEVYLPSLQEWICIEVTTEKINKPAEMESIA
TRPLQYVVGFDNNHKVKDVTCRYAEKWLSFNRKLRIDREWWAKTLDPYKP
DPSAIHTAEDAKLKRSLLQQDFPKSIGEFKNHPLYALGRHLLKFEAIYPA
DAAPLGFIRNEAIYSRDCVHELHTRETWLKQARCIKKNEEAYKLVKGRPK
RHTPENERDNVKLEVYGLWQTEVYVPPPVKDGIVPKNEYGNVELFKPSML
PEGAVHLPMSNMMKIARKLKIDHAQAMMGWDFHGGWAHPVFEGIVVAKEH
EDVLMDAWQRDEEETQRKEKEKREKSIYENWKKLIRGILIHHKLMAKYNN
FQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001623XLOC_001623Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002954TCONS_00002954Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018327BHD_2
IPR018328Rad4_beta-hairpin_dom3
IPR018326Rad4_beta-hairpin_dom1
IPR018325Rad4/PNGase_transGLS-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 180..200
NoneNo IPR availableCOILSCoilCoilcoord: 955..975
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..282
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 485..659
NoneNo IPR availableSUPERFAMILY54001Cysteine proteinasescoord: 667..783
coord: 376..486
IPR018327Rad4 beta-hairpin domain 2SMARTSM01031BHD_2_2coord: 822..877
e-value: 3.7E-18
score: 76.3
IPR018327Rad4 beta-hairpin domain 2PFAMPF10404BHD_2coord: 823..877
e-value: 1.3E-9
score: 38.7
IPR018328Rad4 beta-hairpin domain 3SMARTSM01032BHD_3_2coord: 884..958
e-value: 3.3E-40
score: 149.6
IPR018328Rad4 beta-hairpin domain 3PFAMPF10405BHD_3coord: 884..956
e-value: 2.8E-26
score: 91.6
IPR018326Rad4 beta-hairpin domain 1SMARTSM01030BHD_1_2coord: 768..820
e-value: 1.8E-22
score: 90.7
IPR018326Rad4 beta-hairpin domain 1PFAMPF10403BHD_1coord: 771..819
e-value: 1.3E-15
score: 56.9
IPR018325Rad4/PNGase transglutaminase-like foldPFAMPF03835Rad4coord: 642..761
e-value: 1.6E-20
score: 73.2

Blast
[Close]
BLAST of TCONS_00002954-protein vs. Swiss-Prot (Human)
Match: XPC (DNA repair protein complementing XP-C cells OS=Homo sapiens GN=XPC PE=1 SV=4)

HSP 1 Score: 396.356 bits (1017), Expect = 1.915e-122
Identity = 271/753 (35.99%), Postives = 388/753 (51.53%), Query Frame = 0 
Query:  308 EEVNEVTMTSPSKKIKVEDQNVDVKDVQISVGVTSIHQKKKRKTRQEKIFI----WLRQMAGRILRERKQLLHKCHILCFFASSLKKNEICNNPTNQAICLSMLPLNHAEMQEGKMQNWGLPQITRLVTWF--------------QKEIPSCTE--FTLYIDKEAEQIKTLNRIHILTMILRALGFLTRLVASFQPISPKVKDSDSNPNSPTLKNEDEKKPSTSK-QKDPTSSKKNNTKKSEKEVKSPYFKNEDSKSSIKKGSSSKDSKT------RNKEAIPISSTKRSKTSNKKEKIETPRSEGR-RRNTKKVNYNEEKMLPTEESDSDSE----------DEFEESGKLK-KKTPA----KKMPQNKDRKGKPNKDKDFIPPKKGPPKGLSKVS-------------TVPGIDYWVEVYLPSLQEWICIEVTTEKINKPAEMESIATRPLQYVVGFDNNHKVKDVTCRYAEKWLSFNRKLRIDREWWAKTLDPYKPDPSAIHTAEDAKLKRSLLQQDFPKSIGEFKNHPLYALGRHLLKFEAIYPADAAPLGFIRNEAIYSRDCVHELHTRETWLKQARCIKKNEEAYKLVKG-----RPKRHTPENERDNVKLEVYGLWQTEVYVPPPVKDGIVPKNEYGNVELFKPSMLPEGAVHLPMSNMMKIARKLKIDHAQAMMGWDFHGGWAHPVFEGIVVAKEHEDVLMDAWQRDEEETQRKEKEKREKSIYENWKKLIRGILIHHKLMAKYN 999
            EE++E  +    +        + VK V+I +      ++ K + R EKI +    +LR+   R  +   +  HK H+LC  A+   +N IC+ P   AI LS++P     +    +  + L   + LV WF              Q  + +  E  F +Y  ++ E++     +HI  +ILRAL  LTRLV S QPI  K         S T K    KKPS  +   DP  S + +++  E   K    K    + +  KG+    +K       R K + P SS +     +K+EK    R  GR RR   +V+Y EE       S SD E          DE  E G  K +K PA    K   ++  R  + +  KD   P        SK               ++ GID W+EV+    ++W+C++     + +P      AT+P+ YVVG D++  V+DVT RY   W++  RK R+D EWWA+TL PY+         ED + +   + Q  P +IG +KNHPLYAL RHLLK+EAIYP  AA LG+ R EA+YSRDCVH LH+R+TWLK+AR ++  E  YK+VKG     R  R      R+   L ++G WQTE Y PP   DG VP+NE+GNV LF PSM+P G V L + N+ ++ARKL ID  QA+ G+DFHGG++HPV +G +V +E +DVL+ AW+ ++   +RKEKEK+EK    NWK L +G+LI  +L  +Y 
Sbjct:  137 EELSEPVLGDVRESTAFSRSLLPVKPVEIEI---ETPEQAKTRERSEKIKLEFETYLRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNNICSQPDLHAIGLSIIPARFTRVLPRDVDTYYL---SNLVKWFIGTFTVNAELSASEQDNLQTTLERRFAIYSARDDEEL-----VHIFLLILRALQLLTRLVLSLQPIPLK---------SATAKG---KKPSKERLTADPGGSSETSSQVLENHTKPKTSKGTKQEETFAKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKATQRRPHGRERRVASRVSYKEESGSDEAGSGSDFELSSGEASDPSDEDSEPGPPKQRKAPAPQRTKAGSKSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQWLEVFCEQEEKWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDAEWWAETLRPYQSPFMDREKKEDLEFQAKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIYPETAAILGYCRGEAVYSRDCVHTLHSRDTWLKKARVVRLGEVPYKMVKGFSNRARKARLAEPQLREENDLGLFGYWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNLPNLHRVARKLDIDCVQAITGFDFHGGYSHPVTDGYIVCEEFKDVLLTAWENEQAVIERKEKEKKEKRALGNWKLLAKGLLIRERLKRRYG 866
The following BLAST results are available for this feature:
BLAST of TCONS_00002954-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XPC1.915e-12235.99DNA repair protein complementing XP-C cells OS=Hom... [more]
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