TCONS_00002943-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002943-protein
Unique NameTCONS_00002943-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length807

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002943-protein ID=TCONS_00002943-protein|Name=TCONS_00002943-protein|organism=Clytia hemisphaerica|type=polypeptide|length=807bp
MGTRIDSHQSLDFFVDHPNRLLVSASTAIALLHSTTLENHPPYVGSRVKN
WALKQGVFILNTLQWNPLKKENGMAEKARPSYQGVKFMLSLGLPXESAEE
GKWYGGEGPPKLPGRQIYAFPGTANFFRLSSSTLVPGANLIFRIRSAADH
SIGRPSRPSKKDECITPPLAPVYNSANVTVLYDGPGTLTIWWEPVDPIHY
GATGFHYIVGYKKLLDPDYTTEKVLITENTLKIESPGVDEAYSFYVRSAN
DKGMGPDPEIYQAKSGTEKPSKAPSEVHVKVILTYSVEFGWAPTEDVTGY
RITYWNVTDSEDNRGFTPDYFLKKRRRRDLQAQLDGYVMQYQYFFGNEYR
NGANLVNATADQVHQATVAAINSGGIGPESEMIEFMTAMRIPEEPIKVSL
QIFGESAKMTWNPPLHPGGFVEGYVISWYRSDPHDKLPTGKIEQIGLQRY
AREAYLIKTFEPMKYYNIRLQARNRMGQGLQWEKQLVAVSANDIPGKPDI
PLVQAFDDTSVNVTFRNSNYGGLPTKFRVIVRIRGRYYEKQVNYEQDFPQ
RAWILVKDLDYLIYDIHTVGVNPLGQSETSDVVEFRPKKKPKFNAHSSPT
EWWGKYWFIIISQLGLFLIIFFATLFALLRSNNYVSTHKKEKSWKTLYSS
RRDLSPLIEHPEPDHPDGYFDSGVAPVTLATKKVVDSYVTSNGDTTSVTT
FGGHTNGYNTGISSVQLHNPPANQSRNQSLQSRLTDNSRFTENTRNRSQQ
SIVKKRPASSSSSETRSSISSRSDDSISDSESYTSESTVKSGKSVYSLSD
DEIKGFI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001615XLOC_001615Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002943TCONS_00002943Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR013783Ig-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 171..255
e-value: 0.24
score: 20.5
coord: 392..479
e-value: 0.0038
score: 26.4
coord: 271..377
e-value: 1.6
score: 17.7
coord: 495..577
e-value: 68.0
score: 4.3
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 167..270
score: 11.409
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 497..590
score: 6.825
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 273..390
score: 7.716
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 392..493
score: 12.056
IPR003961Fibronectin type IIICDDcd00063FN3coord: 168..256
e-value: 6.31992E-5
score: 40.9427
IPR003961Fibronectin type IIICDDcd00063FN3coord: 392..479
e-value: 1.63745E-6
score: 45.9503
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 493..588
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 124..261
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 271..312
coord: 348..482
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 491..588
e-value: 1.8E-6
score: 27.7
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 189..263
e-value: 7.7E-5
score: 22.5
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 62..188
e-value: 0.095
score: 12.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 264..391
e-value: 3.9E-10
score: 39.4
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 392..490
e-value: 1.2E-9
score: 37.8

Blast
[Close]
BLAST of TCONS_00002943-protein vs. Swiss-Prot (Human)
Match: NCHL1 (Neural cell adhesion molecule L1-like protein OS=Homo sapiens GN=CHL1 PE=1 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 4.775e-25
Identity = 111/428 (25.93%), Postives = 180/428 (42.06%), Query Frame = 0 
Query:  131 SSTLVPGANLI-FRIRSAADHSIGR--PSRPSKKDECITPPLAPVYNSANVTVLYDGPGTLTIWWEPVDPIHYGATGFHYIVGYKKLLDPDYTTEKVLITENTLKIESPGVDEAYSFYVRSANDKGMGPDPEIYQAKSGTEKPSKAPSEVHVKVILTYSVEFGWA--PTEDV----TGYRITYWNVTDSEDNRGFTPDYFLKKRRRRDLQAQLDGYVMQYQYFFGNEYRNGANLVNATADQVHQATVAAINSGGIGPESEMIEFMTAMRIPEEP--IKVSLQIFGESAKMTWNPPLHPGGFVEGYVISWYRSDPHDKLPTGKIEQIGLQRYAREAYLIKTFEPMKYYNIRLQARNRMGQG--LQWEKQLVAVSANDIPGKPDIPLVQAFDDTSV-------NVTFRNSNYGGLPTKFRVIVRIRGRYY 538
            ++ ++P A  + ++ R  A + +GR  PS+PS   E  TPP AP  N  N+ V    P  + I WEP+  +     G  Y V +K    P    E+  +T +TL++ +P V   Y   V++ N  G GPDP+     SG + P  AP    V VI +  V+  W+  P + V     GY+I +W      D R    +  + +                   F G   RN   + +  A      TV A NS G GPESE   F T   +PE+P  +KV +++  ++A ++W  P    G + GY++ +   +  D    G++  I +   ++ ++ +        Y   L+A    G G  +  E   +   +  I     + L Q      V        V     N+G   + F+ ++  RGR Y
Sbjct:  670 TTVILPLAPFVRYQFRVIAVNEVGRSQPSQPSDHHE--TPPAAPDRNPQNIRVQASQPKEMIIKWEPLKSMEQNGPGLEYRVTWKPQGAP-VEWEEETVTNHTLRVMTPAVYAPYDVKVQAINQLGSGPDPQSVTLYSGEDYPDTAPVIHGVDVINSTLVKVTWSTVPKDRVHGRLKGYQINWWKTKSLLDGRTHPKEVNILR-------------------FSGQ--RNSGMVPSLDAFSEFHLTVLAYNSKGAGPESEPYIFQTPEGVPEQPTFLKV-IKVDKDTATLSWGLPKKLNGNLTGYLLQYQIIN--DTYEIGELNDINITTPSKPSWHLSNLNATTKYKFYLRACTSQGCGKPITEESSTLGEGSKGIGKISGVNLTQKTHPIEVFEPGAEHIVRLMTKNWGDNDSIFQDVIETRGREY 1070
The following BLAST results are available for this feature:
BLAST of TCONS_00002943-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCHL14.775e-2525.93Neural cell adhesion molecule L1-like protein OS=H... [more]
back to top