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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00002873-protein ID=TCONS_00002873-protein|Name=TCONS_00002873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1269bp
MFNRLRKNLPSRGGGGQQQQPKDTSTEDQKEDEPDTQAGFICPMCMAALP
GPAELQVHFEKVHSEGGSDAEGKLIDIDTSEDQTDALPDQIQEDLAMSPS
NDFSKSQLEMTLDSNAPDTEKEVVLLQQELSEISSQLKEEKWYSGQLKLE
LDKVSKERDKLEEDKQMVEEEFSSQLRSAEAGYLQVAQENEKLKQELTYA
DYKTTKDRHEKLQQEMQAYKNDAVEEKQRRMALEESFKLLQEDYNEEQMK
SSKVEEQLQARPSSDVIDGLDKQVKDLQAEINSMKQKHQQELNEFKQNAK
TKEVDFEKEKSSLNMTIKELKVERDSKEEHISSLQTAVSTSSEASSFSKQ
QLNDKQQQIIELQKNLSEQENNMKDKDNTVSTLEKEINSLKILSVNETSS
KERLQDELNNTTSKLDEMTRLRESTENKLSEVENKLGQQKDEIVRLEKER
IELIAKIEAGEGTDTVIQQLTQEKNKLLETMTSLEKSLADQMKQHQSELD
VIRKDKGEITKELQQSKQDYEKVQLSCKEFEMKHEVAQESIANLKKDLKS
KNDDYFQMESHHANEKTQLNEQISQLTKTNVEINVEFEKTKEKLTQALND
LNKSDKNQAQQASWIETKNNAIAEMTGKISSLQEQLNSKNNDLTALNQSM
NERVDALTKEKGLLELNLEALNKDLREVKAQKVDAEKLIESIRVEKESLE
KIEARLLEKQDELTKEVEDLRTTSKAQEEELRADKEKTVNELQASHTSAL
DGLKNELSEVKNQLDETKINLENTQLNLESEIVKRNKAEKNMMELEQKYA
RIESSLEQKDDVLRSVQEELEVAQKELKKPCESCKNYEIQLCRLQEATRD
QSGQIERLNTKLEEVETNLKEKTTEHESKCKEFEKLTHNHEAKANELNGQ
LNKFKEDIVHHLEEIESLKSEIENLKQQINVSNDEKNQTKLLLSEETEKK
QTLKTEKSELENEVLDLKAEVELNNESIQQLEDSLKEKDEALKQQSDENQ
KKIEDLQQKLHNETEVHQASKTTMASIQQTLKDESVALQNKLDAATKETM
QVRRMKDESEKSHNEELQNIKNALKRQEQEIQNRDRRLNENELAIKTIEK
ERNDIKGELTVSQAKLENSKDENKLLMERLIESEEKETKAKQKYSETNRK
LEQALGGLQELGQENQNIQVQQQMKSTRQWENDADISNCKKCDKSFSFSV
RKHHCRNCGCIFCKDCSAWSAVLASSKKPVRVCEHCSMELNNVRGSSVRR
LSTTSIQSTASSVASPYRP Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046872 |
metal ion binding |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 848..882 |
| None | No IPR available | COILS | Coil | Coil | coord: 144..171 |
| None | No IPR available | COILS | Coil | Coil | coord: 1116..1161 |
| None | No IPR available | COILS | Coil | Coil | coord: 887..1016 |
| None | No IPR available | COILS | Coil | Coil | coord: 202..250 |
| None | No IPR available | COILS | Coil | Coil | coord: 566..607 |
| None | No IPR available | COILS | Coil | Coil | coord: 513..554 |
| None | No IPR available | COILS | Coil | Coil | coord: 349..393 |
| None | No IPR available | COILS | Coil | Coil | coord: 267..305 |
| None | No IPR available | COILS | Coil | Coil | coord: 467..494 |
| None | No IPR available | COILS | Coil | Coil | coord: 317..337 |
| None | No IPR available | COILS | Coil | Coil | coord: 401..456 |
| None | No IPR available | COILS | Coil | Coil | coord: 176..196 |
| None | No IPR available | COILS | Coil | Coil | coord: 1056..1108 |
| None | No IPR available | COILS | Coil | Coil | coord: 1028..1048 |
| None | No IPR available | COILS | Coil | Coil | coord: 615..826 |
| None | No IPR available | GENE3D | 1.20.5.340 | | coord: 898..991
e-value: 3.2E-5
score: 23.2
coord: 345..487
e-value: 0.0053
score: 16.0 |
| None | No IPR available | GENE3D | 1.20.5.50 | | coord: 262..344
e-value: 6.1E-4
score: 18.8
coord: 627..701
e-value: 0.0027
score: 16.7 |
| None | No IPR available | GENE3D | 1.20.120.330 | | coord: 734..897
e-value: 3.4E-5
score: 23.0
coord: 488..626
e-value: 6.7E-5
score: 22.0 |
| None | No IPR available | GENE3D | 1.20.5.390 | | coord: 1119..1172
e-value: 9.9E-13
score: 47.5 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 246..269 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..39 |
| None | No IPR available | CDD | cd15730 | FYVE_EEA1 | coord: 1178..1240
e-value: 1.86202E-28
score: 109.796 |
| None | No IPR available | SUPERFAMILY | 69979 | Eea1 homodimerisation domain | coord: 1120..1175 |
| IPR000306 | FYVE zinc finger | SMART | SM00064 | fyve_4 | coord: 1175..1242
e-value: 1.9E-18
score: 77.3 |
| IPR000306 | FYVE zinc finger | PFAM | PF01363 | FYVE | coord: 1179..1240
e-value: 2.3E-16
score: 59.6 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 1173..1246
e-value: 6.7E-19
score: 67.0 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 42..63 |
| IPR017455 | Zinc finger, FYVE-related | PROSITE | PS50178 | ZF_FYVE | coord: 1183..1241
score: 13.067 |
| IPR011011 | Zinc finger, FYVE/PHD-type | SUPERFAMILY | 57903 | FYVE/PHD zinc finger | coord: 1169..1240 |
Blast
BLAST of TCONS_00002873-protein vs. Swiss-Prot (Human)
Match: EEA1 (Early endosome antigen 1 OS=Homo sapiens GN=EEA1 PE=1 SV=2) HSP 1 Score: 154.451 bits (389), Expect = 1.144e-37 Identity = 80/221 (36.20%), Postives = 130/221 (58.82%), Query Frame = 0
Query: 1025 ASIQQTLKDESVALQNKLDAATKETMQVRRMKDESEKSHNEELQNIKNALKRQEQEIQNRDRRLNENELAIKTIEKERNDIKGELTVSQAKLENSKDENKLLMERLIESEEKETKAKQKYSETNRKLEQALGGLQELGQENQNIQVQQQMKSTRQWENDADISNCKKCDKSFSFSVRKHHCRNCGCIFCKDCSAWSAVLASSKKPVRVCEHCSMELNNVRG 1245
A + +K++ V ++ + K TMQ+ + NE L +K +E Q+ RR++E +EK+ +D++GE+ V +A ++N++DE + L+ER ++ E + K + K E RKL+ +QELG+ENQ++Q++ R+W D ++ NC C K FS +VR+HHCR CG IFC +CSA +A+ SSKKPVRVC+ C N+++G
Sbjct: 1216 AKLHSEIKEKEVGMKKHEENEAKLTMQITAL--------NENLGTVK-------KEWQSSQRRVSE-------LEKQTDDLRGEIAVLEATVQNNQDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALNRKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDAC---FNDLQG 1411
The following BLAST results are available for this feature:
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