TCONS_00002859-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00002859-protein
Unique Name	TCONS_00002859-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	310

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00002859-protein ID=TCONS_00002859-protein|Name=TCONS_00002859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
MHHSDSVRSYFDEGTEENENKQHKYQFNVNDINRKEEKIQNAELHLFKQY
QPNGQGRPRSAMIQIDIINMHNERVISSRIVSVHVHGWLRFPVTKIVKRW
VRKRKNNKGLQVRIRNIGDDKNNVKFGTKNTLRREPMLVVFTKRVKGSSL
AALLNGNGLNILQNNEKKKRVKRTIVTMNDDKPNNHIEHHHKDGHLECQL
KPLRINTRNMGFGENIINPTEININQCVGSCPARIKEDFLNNRHTSHAIF
QAIVADSSRPGATHDQPALPCCSPSEFKDEVMIISGRKGSQELIQLVKFE
KLIATKCACL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001556	XLOC_001556	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00002859	TCONS_00002859	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001839	TGF-b_C
IPR029034	Cystine-knot_cytokine
IPR001111	TGF-b_propeptide

Vocabulary: **Molecular Function**
Term	Definition
GO:0008083	growth factor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008083	growth factor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001839	Transforming growth factor-beta, C-terminal	SMART	SM00204	TGFB_2	coord: 198..310 e-value: 9.1E-8 score: 28.6
IPR001839	Transforming growth factor-beta, C-terminal	PFAM	PF00019	TGF_beta	coord: 197..309 e-value: 3.9E-16 score: 59.7
IPR001839	Transforming growth factor-beta, C-terminal	PROSITE	PS51362	TGF_BETA_2	coord: 170..310 score: 19.059
IPR029034	Cystine-knot cytokine	GENE3D	2.10.90.10		coord: 183..310 e-value: 2.7E-18 score: 66.0
IPR029034	Cystine-knot cytokine	SUPERFAMILY	57501	Cystine-knot cytokines	coord: 192..309
IPR001111	TGF-beta, propeptide	PFAM	PF00688	TGFb_propeptide	coord: 3..130 e-value: 1.0E-15 score: 58.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Blast

[Close]

BLAST of TCONS_00002859-protein vs. Swiss-Prot (Human)
Match: BMP4 (Bone morphogenetic protein 4 OS=Homo sapiens GN=BMP4 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.635e-17
Identity = 80/333 (24.02%), Postives = 148/333 (44.44%), Query Frame = 0

Query:    4 SDSVRSYFDEGTEEN-----ENKQHKYQFNVNDINRKEEKIQNAELHLFKQYQPNG----QGRPRSAMIQI-----DIINMHN-ERVISSRIVSVHVHGWLRFPVTKIVKRWVRKRKNNKGLQVRIRNIGDDKN----------NVKFGTKNTLRREPMLVVFTKRVKGSSLAALLNGNGLNILQNNEKKKRVKRTIVTMNDDKPNNHIEHHHKDGHLECQLKPLRINTRNMGFGENIINPTEININQCVGSCPARIKEDFLNNRHTSHAIFQAIV--ADSSRPGATHDQPALPCCSPSEFKDEVMIISGRKGSQELIQLVKFEKLIATKCAC 309
            +++VRS+  E   EN     EN   ++ FN++ I  + E I +AEL LF++    G    +G  R  + ++     +++  H   R++ +R+V  +V  W  F V+  V RW R+++ N GL + + ++   +           ++  G+ N  +  P+LV F    +G +L                +++R KR+        P +H +   K     C+   L ++  ++G+ + I+ P       C G CP  +  D LN+  T+HAI Q +V   +SS P A        CC P+E     M+        + + L  +++++   C C
Sbjct:  114 ANTVRSFHHEEHLENIPGTSENSAFRFLFNLSSIP-ENEVISSAELRLFREQVDQGPDWERGFHRINIYEVMKPPAEVVPGHLITRLLDTRLVHHNVTRWETFDVSPAVLRWTREKQPNYGLAIEVTHLHQTRTHQGQHVRISRSLPQGSGNWAQLRPLLVTFGHDGRGHALT---------------RRRRAKRS--------PKHHSQRARKKNK-NCRRHSLYVDFSDVGWNDWIVAPPGYQAFYCHGDCPFPLA-DHLNS--TNHAIVQTLVNSVNSSIPKA--------CCVPTELSAISMLY---LDEYDKVVLKNYQEMVVEGCGC 407

The following BLAST results are available for this feature:

BLAST of TCONS_00002859-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00002859-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
BMP4	6.635e-17	24.02	Bone morphogenetic protein 4 OS=Homo sapiens GN=BM...	[more]

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TCONS_00002859-protein (polypeptide) - C. hemisphaerica