TCONS_00002597-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002597-protein
Unique NameTCONS_00002597-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002597-protein ID=TCONS_00002597-protein|Name=TCONS_00002597-protein|organism=Clytia hemisphaerica|type=polypeptide|length=801bp
MGSKHKKRKHESHEKNSKRFKSNLESEGSDNDQEDNSNFGNTDGASADVP
SAAGRKIDGTVNMNQVDEYGAKDYRKTLLKKTDHAARPLWVAPDGIIYLE
SFSPVYKHAHDFLIAIAEPVCRPQFIHEYKLTAYSLYAAVSVGLQTSDIL
EYLTRLSKLTIPDGIVTFIKMCTVSYGKVKLVLKHNRYYVESNFPDALQQ
LLKDPDIQSCRVISKDGVDDLISSKYVAKSSLKLNKQKPGEQQPSSSTQG
QPSEEGAPPPAEDHTPKEVIPSDISDYLGKVMMDDDDEVEEETQAVSFEV
QQDQIEVLQKRCINLDYPLLAEYDFQNDTVNKDIEMDLKPSTMLRPYQEK
SLRKMFGNGRARSGVIVLPCGAGKTLVGVTAACTVRKKCLVLCTSGVSVE
QWKSQFKLWANIDDKHICRFTSDTKDKPVDCHLAVTTYSMIAHTMKRSYE
SLLIMDFLKNTEWGLMLLDEVHTIPAKQFRRVLTIVNAHCKLGLTATLVR
EDDKIADLNFLIGPKLYEANWMELQNKGFLARVQCAEVWCPMSPEFYREY
LGTPTRKRNLFYVMNPNKFRACEFLIRYHERRNDKIIVFADNVFALKHYA
VALNRPYIYGPTSQSERLHIIQNFVHNPLVNTIFISKVGDTSFDMPEANV
LIQISSHGGSRRQEAQRLGRILRAKKNMAAEEYNAFFYSLVSTDTEEMYF
SNKRQRFLINQGYSYKVITKLAGMDEETLSYSDKKEVHNLLQKVVKATDA
DAEEEKVGTDVSRGGATRRPGSMASMSGGDDMMYMENKSKTRHPLFKRFR
M
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001412XLOC_001412Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002597TCONS_00002597Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR001161XPB/Ssl2
IPR032830XPB/Ssl2_N
IPR032438ERCC3_RAD25_C
IPR006935Helicase/UvrB_N
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
GO:0006289nucleotide-excision repair
Vocabulary: Molecular Function
TermDefinition
GO:0004003ATP-dependent DNA helicase activity
GO:0016787hydrolase activity
GO:0003677DNA binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
molecular_function GO:0005524 ATP binding
molecular_function GO:0004003 ATP-dependent DNA helicase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0016787 hydrolase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00851XRODRMPGMNTBcoord: 462..482
score: 78.57
coord: 631..649
score: 82.89
coord: 681..704
score: 77.6
coord: 768..787
score: 55.62
coord: 325..351
score: 68.98
coord: 356..378
score: 94.57
coord: 528..550
score: 80.98
coord: 565..580
score: 81.25
coord: 650..675
score: 93.75
coord: 87..107
score: 68.45
coord: 173..192
score: 84.38
coord: 584..606
score: 70.65
NoneNo IPR availableGENE3D3.40.50.300coord: 553..712
e-value: 7.1E-14
score: 51.0
NoneNo IPR availableGENE3D3.40.50.300coord: 330..527
e-value: 7.6E-28
score: 96.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 233..270
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 752..784
NoneNo IPR availableCDDcd00079HELICccoord: 558..674
e-value: 5.58144E-9
score: 53.7809
NoneNo IPR availableCDDcd00046DEXDccoord: 362..498
e-value: 3.96599E-11
score: 60.4288
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 340..520
e-value: 2.5E-21
score: 86.9
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 355..516
score: 19.431
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 597..675
e-value: 1.3E-5
score: 34.6
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 570..730
score: 11.36
IPR001161Helicase XPB/Ssl2TIGRFAMTIGR00603TIGR00603coord: 73..797
e-value: 0.0
score: 1230.3
IPR032830Helicase XPB/Ssl2, N-terminal domainPFAMPF13625Helicase_C_3coord: 89..212
e-value: 8.1E-37
score: 126.1
IPR032438ERCC3/RAD25/XPB helicase, C-terminal domainPFAMPF16203ERCC3_RAD25_Ccoord: 524..761
e-value: 8.4E-121
score: 401.7
IPR006935Helicase/UvrB, N-terminalPFAMPF04851ResIIIcoord: 343..498
e-value: 9.4E-18
score: 64.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 448..526
coord: 559..743
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 295..518

Blast
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BLAST of TCONS_00002597-protein vs. Swiss-Prot (Human)
Match: ERCC3 (TFIIH basal transcription factor complex helicase XPB subunit OS=Homo sapiens GN=ERCC3 PE=1 SV=1)

HSP 1 Score: 1092.41 bits (2824), Expect = 0.000e+0
Identity = 530/762 (69.55%), Postives = 620/762 (81.36%), Query Frame = 0 
Query:   49 VPSAAGRKIDGTVNMNQVDEYGAKDYRKTLLKKTDHAARPLWVAPDGIIYLESFSPVYKHAHDFLIAIAEPVCRPQFIHEYKLTAYSLYAAVSVGLQTSDILEYLTRLSKLTIPDGIVTFIKMCTVSYGKVKLVLKHNRYYVESNFPDALQQLLKDPDIQSCRVISKDG-VDDLISSKYVAKSSLKLNKQKPGEQQPSSSTQGQPSEEGAPPPAEDHTPKEVIPSDISDYLGKVMMDDDDEVEEETQAVSFEVQQDQIEVLQKRCINLDYPLLAEYDFQNDTVNKDIEMDLKPSTMLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKTLVGVTAACTVRKKCLVLCTSGVSVEQWKSQFKLWANIDDKHICRFTSDTKDKPVDCHLAVTTYSMIAHTMKRSYESLLIMDFLKNTEWGLMLLDEVHTIPAKQFRRVLTIVNAHCKLGLTATLVREDDKIADLNFLIGPKLYEANWMELQNKGFLARVQCAEVWCPMSPEFYREYLGTPTRKRNLFYVMNPNKFRACEFLIRYHERRNDKIIVFADNVFALKHYAVALNRPYIYGPTSQSERLHIIQNFVHNPLVNTIFISKVGDTSFDMPEANVLIQISSHGGSRRQEAQRLGRILRAKKNMAAEEYNAFFYSLVSTDTEEMYFSNKRQRFLINQGYSYKVITKLAGMDEETLSYSDKKEVHNLLQKVVKATDADAEEEKVGTDV-SRGG-ATRRPGSMASMSGGDDMMYME-------NKSKTRHPLFKRFR 800
            VPSAAG+++D +    +VDEYGAKDYR  +  K DH +RPLWVAPDG I+LE+FSPVYK+A DFL+AIAEPVCRP  +HEYKLTAYSLYAAVSVGLQTSDI EYL +LSK  +PDGI+ FIK+CTVSYGKVKLVLKHNRY+VES  PD +Q LL+DP I+ CR+ + +G   +LI+  + +KS++    +  G   PS+S    P              K  IP D+ D+  +  MD D+E EEETQ VSFEV+Q+ IE LQKRCI+L+YPLLAEYDF+ND+VN DI +DLKP+ +LRPYQEKSLRKMFGNGRARSGVIVLPCGAGK+LVGVTAACTVRK+CLVL  S VSVEQWK+QFK+W+ IDD  ICRFTSD KDKP+ C +A++TYSM+ HT KRS+E+  +M++LK  EWGLM+LDEVHTIPAK FRRVLTIV AHCKLGLTATLVREDDKI DLNFLIGPKLYEANWMELQN G++A+VQCAEVWCPMSPEFYREY+   T+KR L Y MNPNKFRAC+FLI++HERRNDKIIVFADNVFALK YA+ LN+PYIYGPTSQ ER+ I+QNF HNP +NTIFISKVGDTSFD+PEANVLIQISSHGGSRRQEAQRLGR+LRAKK M AEEYNAFFYSLVS DT+EM +S KRQRFL++QGYS+KVITKLAGM+EE L++S K+E   LLQKV+ ATD DAEEE V  +  SR   A+RR G+M+SMSG DD +YME         SK  HPLFKRFR
Sbjct:   38 VPSAAGKQVDES--GTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTAESSG--GPSTSRVTDPQ------------GKSDIPMDLFDFYEQ--MDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFR 781
The following BLAST results are available for this feature:
BLAST of TCONS_00002597-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERCC30.000e+069.55TFIIH basal transcription factor complex helicase ... [more]
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