TCONS_00002547-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002547-protein
Unique NameTCONS_00002547-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002547-protein ID=TCONS_00002547-protein|Name=TCONS_00002547-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
MGYSVEKFVATVDQNLVCNICAGIMKDSVITLCGHSFCHACLSTWLTKPE
TDSCPVCRSYTSKYEIIPNINIRSIINALPVWCDHKDNGCNIVVKLDGLN
QHTIDCEFRNVECVACKLTVRHCDLATHCLSCVAMVKEVSSVKRKEDLTI
DILSRKVAVLELELHEAKKELTQSKQLVGELEMELSELRDQATTWTGNSL
TPDFDPDYSYGYSPSSISQLSCLISKYLLSKPPCVDRNRIFMAIKRSFTY
YHNYAGYAEDVHMLLATAYASNWFPEHHRWTLERWLEQVTHERFPRANAT
NNSSISST
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001366XLOC_001366Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002547TCONS_00002547Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 150..191
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 18..57
e-value: 1.3E-9
score: 37.7
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 10..83
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 18..57
e-value: 2.9E-6
score: 36.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 18..58
score: 13.419
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 18..59
e-value: 2.94689E-7
score: 45.5144
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 11..81
e-value: 3.9E-17
score: 61.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 82..129
e-value: 2.8E-9
score: 36.5
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 33..42
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 78..132

Blast
[Close]
BLAST of TCONS_00002547-protein vs. Swiss-Prot (Human)
Match: RNF41 (E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens GN=RNF41 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 5.730e-22
Identity = 60/177 (33.90%), Postives = 100/177 (56.50%), Query Frame = 0 
Query:    1 MGYSVEKFVATVDQNLVCNICAGIMKDSVITL-CGHSFCHACLSTWLTKPETDSCPVCRSYTSKYEIIPNINI-RSIINALPVWCDHKDNGCNIVVKLDGLNQHTIDCEF---RNVEC-VACKLTVRHCDLATHCLSCVAMVKEVSSVKRKEDLTIDILSRKVAVLELELHEAKKEL 171
            MGY V +F   VD++L+C IC+G++++ V    C H+FC+AC++ W ++ +T  CPV RS  +   + P   I R++++ L + CD+   GC+ VV+LD L  H  DCE    R V C   C L +   +L  H  +C   +K + SV +++   I  L +  A  + +L E K+++
Sbjct:    1 MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQT--CPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNH--NC---IKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDI 170
The following BLAST results are available for this feature:
BLAST of TCONS_00002547-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNF415.730e-2233.90E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens ... [more]
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