TCONS_00002418-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002418-protein
Unique NameTCONS_00002418-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length591

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002418-protein ID=TCONS_00002418-protein|Name=TCONS_00002418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=591bp
MACNKQNGKSKKNPTAHKTIPTGFQFEIAGTERKEFECPICLCIMRNATE
LPCEHLMCQECLEYFEQDKVACAKRNGQAKFQCSVCMTPYKKDDKKAVRS
VDRMIQTTVLVKCLQSGCDWIGCIQDQPEHDRKCRSVRMQCPYHSIGCLA
RFKQGELTEHIKTNQENHCMLVLIAVNGLAKEKEKYCQKIADQNKKLESY
ECFETLLQGNIKRLDVLERDNLELKSKLGNYEKLAHENASILQRLESLEQ
KYDALLKAVAFSNPARLQNLVAENKALSQTVSELKKMVQNQPSNVHLDVG
RCQQLLLESSKHAKRLNALESENKELKKIAKEQKKEITTLTEGLDHLKKD
VSREQKRVNSEFADFNRLIESMTGEVAYLEEDIVGLTSFAEKVSKLHLQL
SDKQLWEASSVIQFLKKKHYDSHATVQKWDKLSDDIRYDLSTIKVEDTSY
LDTLQQAVSSYKETIFPHAWNARIKKLFDFLPYGYLVGAYVKVACGPLNH
IKVDVYRSVVEFNLETSKEKYHKHSSLVASYRHYSEDCLHVAFYHYRAIE
SLRLLNWDDEVKSKKLMPGKMVNLDDQFSGYGCVILEMSRK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001302XLOC_001302Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002418TCONS_00002418Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR027370Znf-RING_LisH
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 302..350
NoneNo IPR availableCOILSCoilCoilcoord: 214..258
NoneNo IPR availableCOILSCoilCoilcoord: 267..287
NoneNo IPR availableGENE3D1.20.1170.10coord: 156..296
e-value: 0.0031
score: 16.0
NoneNo IPR availableGENE3D1.20.5.320coord: 350..477
e-value: 0.0032
score: 16.9
NoneNo IPR availableGENE3D1.10.287.540coord: 315..349
e-value: 0.2
score: 11.1
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 33..107
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 38..86
e-value: 0.0016
score: 27.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 38..86
score: 9.421
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 37..72
e-value: 4.66596E-4
score: 37.4252
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 38..83
e-value: 6.8E-6
score: 25.9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 105..155
e-value: 7.9E-10
score: 38.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 24..104
e-value: 6.2E-10
score: 37.9
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 53..62
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 110..176

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002418-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top