TCONS_00002417-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00002417-protein
Unique Name	TCONS_00002417-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1128

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00002417-protein ID=TCONS_00002417-protein|Name=TCONS_00002417-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1128bp
LTFELGLTQFELADVALSTLEKWYKESCSDRNHTQDMNDLLSEILPSLDD
YLRSELNSNEPNEDFSISKASMTRSEKKVKRVPIRYLKALIKANKQSLQS
PLEKLKLRILRFIGSLGGISSTALAQTTEDASLQNTIAWNNEELLSFQLP
FPDMKAAIYLDSFLPRVVELAQTSVNRQTKVVACELLHALVLFMIGKSVH
DPIQHKKQVSMEALYKRVFPAILKLACGSEQVAEQLFSPLVFQIIHWMSG
NTKYESPETVVLLNTLLDGVANEDDCSLRDFSAKCIKEFFQWSIKHLSPK
QLEKNPANPKSLFKRLSSLALHPSPFKRLGAAICFNNIYSIFREEDTLVS
KFTLELLVVYIKSLSLAHKDEVSLGTVEQCQNVLNHLEKIIKKKAKMFLK
AHKDRNVPTDVRVASKEGFTVYHINLLLIKYCGAPQTACRHACMKLFNQF
LPLQEDVDSVSNWMKAFANKEGGKFFTARCFEKGGISKAGIINFPTLTEV
ITKNQLSMESLSQWLENLLAALDNYCWVLGAKYLTCAQLLKDNPRTNLLK
SLSYFLDTICLNTIEGIFKNCNLNDDITITPNQLDAFNKLRCTVVVRTIN
FLTLSLFDGYITSHQNQWIDVLNEKLFRIVTLCIMKPSRVGFNITDKIVL
EKLPGELEKFSNALMKFGPLDVKKQFTDALKLLLKQPEFDLLTYLPLDLT
HSIDVCRTLDLGHLLSGLMFLSGLNVLNDLIPTQNRAHLHTSLLGTLTRS
LVPLQSATSSSTKQKTLSTDPQLKSLSEKILRFVLILDAESKKIVDLLLD
TSTITLEGHTDKRGSTFYHSFPQIFNEHFISTPNLFNVLVKPGVANAELI
LTIIHGICNLILRTNDKERNKNSMNFCRFLASNLTNLSHWSHGDDDLLVL
VLQITKLLVQIHPDVIKDKGFLTSTVQIGFKEPTKSKLAVKSRACDVIPH
VLKHCSRDQTEKVCQMVKNYVAEAFPFSSEDLTVGTTKYLEYMAQLDQLC
RMLTTCGEPGLFKAMISIMVRETTEVYQQKIEPILLKLIKSLEEKKKASE
VFNYCMEVFKDEISYTNQIRQMAIERLCLPLLEHTSSKTLEEFFVTHIRY
LVNCIEEKFNKYVDEEYEKQIINKTCAF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001301	XLOC_001301	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00002417	TCONS_00002417	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012582	NUC194
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0004677	DNA-dependent protein kinase activity
GO:0005524	ATP binding
GO:0003677	DNA binding
GO:0005488	binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006303	double-strand break repair via nonhomologous end joining

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005488	binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004677	DNA-dependent protein kinase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012582	NUC194	PFAM	PF08163	NUC194	coord: 1069..1128 e-value: 3.0E-10 score: 39.8
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 8..1106 e-value: 1.0E-14 score: 52.7
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 766..795 coord: 1027..1113 coord: 159..457 coord: 840..994

Blast

[Close]

BLAST of TCONS_00002417-protein vs. Swiss-Prot (Human)
Match: PRKDC (DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=1 SV=3)

HSP 1 Score: 536.184 bits (1380), Expect = 6.582e-163
Identity = 372/1160 (32.07%), Postives = 602/1160 (51.90%), Query Frame = 0

Query:    1 LTFELGLTQFELADVALSTLEKWYKESCSDRNHTQDMNDLLSEILPSLDDYLRSELNSNEPNEDFSISKASMTRSEKKVKRVPIRYLKALIKANKQSLQSPLEKLKLRILRFIGSLGG-ISSTALAQTTEDASLQNTIAWNNEELLSFQLPFPDMKAAIYLDSFLPRVVELAQTSVNRQTKVVACELLHALVLFMIGKSVHDPIQHKKQVSMEALYKRVFPAILKLACGSEQVAEQLFSPLVFQIIHWMSGNTKYESPETVVLLNTLLDGVANEDDCSLRDFSAKCIKEFFQWSIKHLSPKQLEKNPANPKSLFKRLSSLALHPSPFKRLGAAICFNNIYSIFREEDTLVSKFTLELLVVYIKSLSLAHKDEVSLGTVEQCQNVLNHLEKIIKKKAKMFLKAHKDRNVPTDVRVASKEGFTVYHINLLLIKYCGAPQTACRHACMKLFNQFLPLQEDVDSVSNWMKAFANKEGGKFFTARCFEKGGISK-AGIINFPTLTEVITKNQLSMESLSQWLENLLAALDNYCWVLGAKYLTCAQLLKDNPRTNLLKSLSYFLDTICLNTI---EGIFKNCNLNDDITITPNQLDAFNKLRCTVVVRTINFLTLSLFDGYITSHQNQW----IDVLNEKLFRIVTLCIMKPSRVGFNITDKIVLEKLPGELEKFSNALMKFGPLDVKKQFTDALKLLLK-----QPEFDLLTYLPLDLTHSIDVCRTLDLGHLLSGLMFLSGLNVLNDLIPTQNRAHLHTSLLGTLTRSLVPLQSATSSSTKQKTLSTDPQLKSLSEKILRFVLILDAESKKIVDLLLDTSTITLEGHTDKRGSTFYHSFPQIFNEHFISTPN---LFNV------LVKPGVANAELILTIIHGICNLILRTNDKERNKNSMNFCRFLASNLTNLSHWSHGD-----DDLLVLVLQITKLLVQIHPDVIKDKGFLTS--------TVQIGFKEPTKSKLAVKSRACDVIPHVLKHCSRDQTEKVCQMVKNYVAEAFPFSSEDLTVGTTKYLEYMAQLDQLCRMLTTCGEPGLFKAMISIMVRETTEVYQQKIEPILLKLIKSLEEKKKASEVFNYCMEVFKDEISYTNQIRQMAIERLCLPLLEHTSSKTLEEFFVTHIRYLVNCIEEKFNKYVDEEYEKQIINK 1124
            + F+LGL+   LA+V L+ LE+W   S     H   M     +ILP LD YL++   S+E   ++ +S  S   ++K   +V +++LK     +     S LE++++R+++ +GSLGG I+   L  T+ D  +++ +AW+ E+ LSF +PF +MK  I+LD FLPRV ELA T+ +RQTKV ACELLH++V+FM+GK+   P   +    M  LYKR FP +L+LAC  +QV  QL+ PLV Q+IHW + N K+ES +TV LL  +LDG+ +  D +LRDF  +CI+EF +WSIK ++P+Q EK+P N KSLFKRL SLALHP+ FKRLGA++ FNNIY  FREE++LV +F  E LV+Y++SL+LAH DE SLGT++QC + ++HL +II+KK     KA K R +P     ++     +  +   L+ +CG PQT CRH  ++LF +F+PL     S + W+K    +EG  F     FE GG  + +GI+  PTL  +  +   S+++   WL+ LLAAL+ Y   +G + +   Q+L    +++LLK++++FL++I ++ I   E  F      +    +P + + +N  +CTVVVR + F T  L      +    W     D+ N  L R++   + +P+ +GFNI D  V+  LP        AL K  P      + D L+  L+     Q   +L           +D  R   L  ++S    L    +L++++P+Q+   LH S +GT   SLV  +       +Q   S D   K L+  +L          +++V LLL+ + ++       +GS  + S  + F   F  T N   L N+      L++  V N +++  +++G+ +   R    ++++        L    T L HW   D     D  L   + +  LL +I   +     F TS        T  I     TK  L +K +A  ++P      +    E++ ++++  +   FP  S +   GT ++  Y+  + +    L     P L + M  ++ RE   V ++  +    ++ +      +   +     E+F+ +    +  RQ  ++R  L LL H S   L EFF T +   ++ ++ +F K  +  ++ QI  K
Sbjct:  754 MAFKLGLSYTPLAEVGLNALEEW---SIYIDRHV--MQPYYKDILPCLDGYLKTSALSDETKNNWEVSALSRA-AQKGFNKVVLKHLKKTKNLSSNEAIS-LEEIRIRVVQMLGSLGGQINKNLLTVTSSDEMMKSYVAWDREKRLSFAVPFREMKPVIFLDVFLPRVTELALTASDRQTKVAACELLHSMVMFMLGKATQMPEGGQGAPPMYQLYKRTFPVLLRLACDVDQVTRQLYEPLVMQLIHWFTNNKKFESQDTVALLEAILDGIVDPVDSTLRDFCGRCIREFLKWSIKQITPQQQEKSPVNTKSLFKRLYSLALHPNAFKRLGASLAFNNIYREFREEESLVEQFVFEALVIYMESLALAHADEKSLGTIQQCCDAIDHLCRIIEKKHVSLNKAKK-RRLPRGFPPSA--SLCLLDLVKWLLAHCGRPQTECRHKSIELFYKFVPLLPGNRSPNLWLKDVLKEEGVSFLI-NTFEGGGCGQPSGILAQPTL--LYLRGPFSLQATLCWLDLLLAALECYNTFIGERTVGALQVLGTEAQSSLLKAVAFFLESIAMHDIIAAEKCFGTGAAGN--RTSPQEGERYNYSKCTVVVRIMEFTTTLL-----NTSPEGWKLLKKDLCNTHLMRVLVQTLCEPASIGFNIGDVQVMAHLPDVCVNLMKAL-KMSP------YKDILETHLREKITAQSIEELCAVNLYGPDAQVDRSR---LAAVVSACKQLHRAGLLHNILPSQS-TDLHHS-VGTELLSLV-YKGIAPGDERQCLPSLDLSCKQLASGLLELAFAFGGLCERLVSLLLNPAVLSTASLGSSQGSVIHFSHGEYFYSLFSETINTELLKNLDLAVLELMQSSVDNTKMVSAVLNGMLDQSFRERANQKHQG-------LKLATTILQHWKKCDSWWAKDSPLETKMAVLALLAKIL-QIDSSVSFNTSHGSFPEVFTTYISLLADTKLDLHLKGQAVTLLP-FFTSLTGGSLEELRRVLEQLIVAHFPMQSREFPPGTPRFNNYVDCMKKFLDALELSQSPMLLELMTEVLCREQQHVMEELFQSSFRRIARRGSCVTQVG-LLESVYEMFRKDDPRLSFTRQSFVDRSLLTLLWHCSLDALREFFSTIVVDAIDVLKSRFTKLNESTFDTQITKK 1870

The following BLAST results are available for this feature:

BLAST of TCONS_00002417-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00002417-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PRKDC	6.582e-163	32.07	DNA-dependent protein kinase catalytic subunit OS=...	[more]

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TCONS_00002417-protein (polypeptide) - C. hemisphaerica