TCONS_00002413-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002413-protein
Unique NameTCONS_00002413-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002413-protein ID=TCONS_00002413-protein|Name=TCONS_00002413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp
LDDNSTKELFKYLKKSLMYKDYSRYEVLKAAMNLINTHGTLWKEYLTKDA
EEIIQALNHWSDHLNRDVKYLAMDTVNYVLLQISVFISEQGKVGQKQYAS
TLLKLMQKFSKTLSSSQPSAKELSMAINGYGKLSEACKEYMPENEMKKMF
EEIIKRTEQCFMNLKGRDDSDLHQLPTFLEALLRILNNLPEISQSTLNPL
ERILITLFDYYPWLGKNGQFVFKRGFTMFVQVLAGHPSLMKYSLGTLLYQ
CLIRSCSHALPELQQESGEEETDDYRSKDVQISYKTFLPLWIHLIDHQNY
NILPMSEEESRNLKEIVYDGVINAVLSTLNKLNLTAQKESTSPSSDTDLV
DVDDSKHDADPTSGLVATMPNDFQVFVNIVEFVRGLISTHSMSSFERWQL
VFVENVITLSSRYPLVSGFYKLLQTTCQIIEKIKPVQVTFCLFMICTIAM
SSVITSRSQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001300XLOC_001300Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002413TCONS_00002413Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 2..432
e-value: 2.4E-9
score: 35.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 337..356
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 11..208
coord: 235..302

Blast
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BLAST of TCONS_00002413-protein vs. Swiss-Prot (Human)
Match: PRKDC (DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.199e-47
Identity = 120/448 (26.79%), Postives = 220/448 (49.11%), Query Frame = 0 
Query:    2 DDNSTKELFKYLKKSLMYK-DYSRYEVLKAAMNLINTHGTLWKEYLTKDAEEIIQALNHWSDHLNRDVKYLAMDTVNYVLLQISVFISEQGKVGQKQYASTLLKLMQKFSKTLSSSQPSAKELSMAINGYGKLSEACKEYMPENEMKKMFEEIIKRTEQCFMNLKGRDDSDLHQLPTFLEALLRILNNLPEISQSTLNPLERILITLFDYYPWLGKNGQFVFKRGFTMFVQVLAGHPSLMKYSLGTLLYQCLIRSCSHALPELQQESGEEETDDYR-SKDVQI------SYKTFLPLWIHLIDHQNYNILPMSEE-------ESRNLKEIVYDGVINAVLSTLNKLNLTAQKESTSPSSDTDLVDVDDSKHDADPTSGLVATMPNDFQVFVNIVEFVRGLISTHSMSSFERWQLVFVENVITLSSRYPLVSGFYKLLQTTCQIIEKIK 434
            D  +++E+F ++ K++  + D  RY V  A + L   H + +   L  +   + + L  W  H N ++K  A+  +   L Q+S  +++  ++    + + L   M++F   + +   + KELS+AI GYG  +  CK  +   ++  M+ E+I+R +Q F+      D  ++Q+P+FL+++  +L  L  + +     LE +++   D +P      Q V  R        LA    +++  + T+++Q LIR CS   P +  +  E E++D+R S +V+       +YK ++ L+ HL+         +++E        S +L  ++YD  + +VL  + KL+LT + ++     + D          +DP + L    P DF  F+N+VEF R ++       FE W   F   +I  S+R PL+SGFYKLL  T +  +KIK
Sbjct:  241 DPQTSREIFNFVLKAIRPQIDLKRYAVPSAGLRLFALHASQFSTCLLDNYVSLFEVLLKWCAHTNVELKKAALSALESFLKQVSNMVAKNAEM----HKNKLQYFMEQFYGIIRNVDSNNKELSIAIRGYGLFAGPCK-VINAKDVDFMYVELIQRCKQMFLTQTDTGDDRVYQMPSFLQSVASVLLYLDTVPEVYTPVLEHLVVMQIDSFPQYSPKMQLVCCRAIVKVFLALAAKGPVLRNCISTVVHQGLIRICSK--PVVLPKGPESESEDHRASGEVRTGKWKVPTYKDYVDLFRHLLSSDQMMDSILADEAFFSVNSSSESLNHLLYDEFVKSVLKIVEKLDLTLEIQTVGEQENGDEAPGVWMIPTSDPAANLHPAKPKDFSAFINLVEFCREILPEKQAEFFEPWVYSFSYELILQSTRLPLISGFYKLLSITVRNAKKIK 681
The following BLAST results are available for this feature:
BLAST of TCONS_00002413-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRKDC1.199e-4726.79DNA-dependent protein kinase catalytic subunit OS=... [more]
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