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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00002319-protein ID=TCONS_00002319-protein|Name=TCONS_00002319-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1193bp
DKKEEPFIKRCLTLKQISTGKCVISTSDKIEQQRFNLMAQCPDKEELTLK
LVDDGVKKIGNYRLVVQDQQTYLVLTGIHLRTGYQYRFVLSQNSNAVFHS
PDFDPKETSGEVFPTPCSNFVIAHNTGHPSSFHQYDTPQNKPKFKPLNLI
QGAKIYIPTAQRFHEIALEYKQNNSGYDDCFPPQYLLKQETIKTLTGYLS
ESKKNLKMLVGYNHMHHLKTFGYTYKDLEGFDHHDAHDDTIVVLDDNQKM
IYYIRVLIDQAPSIDDYYKEIARCDDFVKSLFMLHGERLTDHSIGVCSLL
ALPMVQLKDCDRSLLSVSENSKECCILFKEHLESKDSLKKELDQYLHRIH
TIRKTSKLLADGNHFEKIIAESMATMSLQQAFLPRLTMDTQAQILSLFLN
GEQYEAINHPNNKRIIRGPFGSGKSLVLEKIAEKLFGSMQDGIIYYICYD
PYSLLDARMEEIFKEVTDKHQDPGNVKFVTSTVYQLLKDAGETEPINDLV
KVMKHCLQDANGQQVHFLFDEVDTSYFNKENADSLKNFVDDETSLAMSTI
ILALQCTEKELIVHDGKGLTVELKNYCNDRINLTGLKLLRPLTKSMRMVK
NLYKLKEVAEDKAGQESVVTALKKNETPRKPSTPDNTINKKTKAASQPKR
SIQSTTLTTPPRNSTTSPKRMDPPSPSFNNIVAPEVVRTARVKPKLEPVQ
IKPVNEEEEQKKLISPEKEKIPTQPRPSPKKDPVVELDGKEEVNKINENN
ATMSSTMNLSPTKISVDQLAMYSTEPFTQDESKSMGGKFEHNFKFHHSKV
GVSIPGKKASIVYLNKSFEMSSLEGAMVLQEILSSEILFQRDVKSTIICS
NQEELDAVMFVIKKVFDEESYCQYTPLISKDIPTREQKRDAWLKCNSPSH
KILVTDFQSFRGCEAEHCVTFLKANDANYIPHILVEVFARAIAHLLVLVI
PPPSTDNGNGRFQEVLKAWRDEELADVFGFNSKDTETGFELTLKSVSGAD
GSKVIDSKQINIERSSQEEFDVFKKRTNKDHAINECLRLFNENLAVHAPD
ILSLSLKKLTNDAMSLDQLDLVEQKHFGFLIGHGGAVIKSLKRDLDVDIE
IEHVERSFKIRGSFEKKVNAVKVIKKKLDTEFWETLDIPFSLHRDILSQK
YHWAQKFQVRVEKTKDRRKIQIQGEIGNVRKVLEEINEISNSR Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0003723 | RNA binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0003723 |
RNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 328..355 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 391..770
e-value: 1.0E-5
score: 24.4 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 620..682 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 703..734 |
| None | No IPR available | PROSITE | PS50084 | KH_TYPE_1 | coord: 1072..1128
score: 10.169 |
| None | No IPR available | CDD | cd00105 | KH-I | coord: 1071..1125
e-value: 5.9323E-6
score: 44.4731 |
| IPR004087 | K Homology domain | SMART | SM00322 | kh_6 | coord: 1065..1129
e-value: 0.0019
score: 27.5 |
| IPR004088 | K Homology domain, type 1 | GENE3D | 3.30.1370.10 | | coord: 1070..1137
e-value: 7.6E-8
score: 32.0 |
| IPR004088 | K Homology domain, type 1 | GENE3D | 3.30.1370.10 | | coord: 1151..1193
e-value: 0.41
score: 10.1 |
| IPR004088 | K Homology domain, type 1 | PFAM | PF00013 | KH_1 | coord: 1071..1125
e-value: 1.7E-6
score: 27.6 |
| IPR004088 | K Homology domain, type 1 | SUPERFAMILY | 54791 | Eukaryotic type KH-domain (KH-domain type I) | coord: 1071..1144 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 411..557 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 395..452
coord: 329..343 |
Blast
The following BLAST results are available for this feature:
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